Hb_173953_010

Information

Type -
Description -
Location Contig173953: 3372-4295
Sequence    

Annotation

kegg
ID rcu:RCOM_1267370
description hypothetical protein
nr
ID XP_002530552.1
description hypothetical protein RCOM_1267370 [Ricinus communis]
swissprot
ID O42260
description Gem-associated protein 2 OS=Xenopus laevis GN=gemin2 PE=2 SV=1
trembl
ID B9SX33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267370 PE=4 SV=1
Gene Ontology
ID GO:0005681
description gem-associated protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16542: 3220-3759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173953_010 0.0 - - hypothetical protein RCOM_1267370 [Ricinus communis]
2 Hb_004324_340 0.0620097423 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001610_110 0.0959263069 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_000342_110 0.0965343551 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
5 Hb_009615_150 0.0982170011 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
6 Hb_000621_080 0.1027964633 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001720_010 0.1046979529 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_000059_210 0.1057418072 - - conserved hypothetical protein [Ricinus communis]
9 Hb_054865_090 0.1077104009 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
10 Hb_002745_010 0.1077876837 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
11 Hb_000224_060 0.1083081335 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
12 Hb_002495_070 0.1083415181 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
13 Hb_000567_210 0.1113538654 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
14 Hb_003878_140 0.1123499308 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
15 Hb_001623_140 0.1129717217 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
16 Hb_063100_010 0.1147067045 - - TATA box-binding protein-associated factor [Populus trichocarpa]
17 Hb_000140_080 0.1148989052 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
18 Hb_000529_020 0.1173808449 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
19 Hb_001220_030 0.1183290296 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
20 Hb_002150_080 0.1189627954 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]

Gene co-expression network

sample Hb_173953_010 Hb_173953_010 Hb_004324_340 Hb_004324_340 Hb_173953_010--Hb_004324_340 Hb_001610_110 Hb_001610_110 Hb_173953_010--Hb_001610_110 Hb_000342_110 Hb_000342_110 Hb_173953_010--Hb_000342_110 Hb_009615_150 Hb_009615_150 Hb_173953_010--Hb_009615_150 Hb_000621_080 Hb_000621_080 Hb_173953_010--Hb_000621_080 Hb_001720_010 Hb_001720_010 Hb_173953_010--Hb_001720_010 Hb_004324_340--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_004324_340--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_004324_340--Hb_001288_080 Hb_004324_340--Hb_001720_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_001610_110--Hb_001288_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_003020_110 Hb_003020_110 Hb_000342_110--Hb_003020_110 Hb_002007_350 Hb_002007_350 Hb_000342_110--Hb_002007_350 Hb_005245_130 Hb_005245_130 Hb_000342_110--Hb_005245_130 Hb_001541_260 Hb_001541_260 Hb_000342_110--Hb_001541_260 Hb_011942_080 Hb_011942_080 Hb_000342_110--Hb_011942_080 Hb_000139_250 Hb_000139_250 Hb_000342_110--Hb_000139_250 Hb_009615_150--Hb_005928_110 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_009615_150--Hb_000621_080 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_000621_080--Hb_086639_070 Hb_001720_010--Hb_001288_080 Hb_001720_010--Hb_001610_110 Hb_001720_010--Hb_001623_140 Hb_001168_040 Hb_001168_040 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34835 7.92359 2.35684 1.39225 8.02639 5.29865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58515 5.75911 3.86766 3.21035 0.695601

CAGE analysis