Hb_174101_010

Information

Type -
Description -
Location Contig174101: 326-1645
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12440g
description POPTRDRAFT_578835; hypothetical protein
nr
ID XP_011020363.1
description PREDICTED: receptor-like protein 12 [Populus euphratica]
swissprot
ID O77742
description Osteomodulin OS=Bos taurus GN=OMD PE=1 SV=1
trembl
ID B9IMM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12440g PE=4 SV=2
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174101_010 0.0 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
2 Hb_001544_070 0.0639709949 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
3 Hb_004166_020 0.073536555 - - -
4 Hb_001174_030 0.0763948951 - - unnamed protein product [Vitis vinifera]
5 Hb_008092_020 0.0767982163 - - transcription factor, putative [Ricinus communis]
6 Hb_000472_020 0.080248143 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
7 Hb_005034_010 0.0874338841 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_014361_020 0.094853851 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
9 Hb_006269_010 0.1047750629 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
10 Hb_000589_240 0.1063480886 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_003835_030 0.1110233424 - - glycosyltransferase, partial [Arabidopsis thaliana]
12 Hb_000028_460 0.1114580616 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
13 Hb_144703_010 0.111603831 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
14 Hb_000092_030 0.1117467112 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
15 Hb_003562_040 0.1130610171 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
16 Hb_005054_280 0.1140108351 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_000477_110 0.1142322022 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
18 Hb_000085_220 0.1143508073 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012743_020 0.1177715693 - - serine/threonine protein phosphatase, putative [Ricinus communis]
20 Hb_001013_080 0.1180759322 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_174101_010 Hb_174101_010 Hb_001544_070 Hb_001544_070 Hb_174101_010--Hb_001544_070 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_001174_030 Hb_001174_030 Hb_174101_010--Hb_001174_030 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_000472_020 Hb_000472_020 Hb_174101_010--Hb_000472_020 Hb_005034_010 Hb_005034_010 Hb_174101_010--Hb_005034_010 Hb_001544_070--Hb_001174_030 Hb_004122_060 Hb_004122_060 Hb_001544_070--Hb_004122_060 Hb_001544_070--Hb_000472_020 Hb_000092_030 Hb_000092_030 Hb_001544_070--Hb_000092_030 Hb_001706_020 Hb_001706_020 Hb_001544_070--Hb_001706_020 Hb_014361_020 Hb_014361_020 Hb_004166_020--Hb_014361_020 Hb_000085_220 Hb_000085_220 Hb_004166_020--Hb_000085_220 Hb_004166_020--Hb_000092_030 Hb_006269_010 Hb_006269_010 Hb_004166_020--Hb_006269_010 Hb_000497_100 Hb_000497_100 Hb_004166_020--Hb_000497_100 Hb_001174_030--Hb_001706_020 Hb_001174_030--Hb_005034_010 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_003835_030 Hb_003835_030 Hb_008092_020--Hb_003835_030 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_000028_460 Hb_000028_460 Hb_008092_020--Hb_000028_460 Hb_002000_130 Hb_002000_130 Hb_008092_020--Hb_002000_130 Hb_008092_020--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_005034_010--Hb_003562_040 Hb_005054_280 Hb_005054_280 Hb_005034_010--Hb_005054_280 Hb_000614_190 Hb_000614_190 Hb_005034_010--Hb_000614_190 Hb_005034_010--Hb_003835_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.18559 0.0926821 0.182314 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109439 0.108346

CAGE analysis