Hb_174541_020

Information

Type -
Description -
Location Contig174541: 17091-22385
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03070g
description hypothetical protein
nr
ID XP_011041371.1
description PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
swissprot
ID Q0JNR2
description Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1
trembl
ID U5FQ48
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03070g PE=4 SV=1
Gene Ontology
ID GO:0004869
description cysteine proteinase inhibitor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16621: 16981-22438
cDNA
(Sanger)
(ID:Location)		 053_B04.ab1: 16981-21645

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174541_020 0.0 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
2 Hb_001369_420 0.1034495184 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
3 Hb_002609_110 0.1054573609 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
4 Hb_008695_180 0.1111009526 - - eukaryotic translation initiation factor [Hevea brasiliensis]
5 Hb_003030_020 0.1120549668 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
6 Hb_000025_140 0.1121924653 - - las1-like family protein [Populus trichocarpa]
7 Hb_001252_080 0.1131333803 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
8 Hb_002299_060 0.1134725314 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
9 Hb_003195_060 0.1138564235 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
10 Hb_000997_210 0.1140843624 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
11 Hb_000444_090 0.1157074339 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012340_010 0.1158123067 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
13 Hb_000358_150 0.1161025607 - - hypothetical protein VITISV_012309 [Vitis vinifera]
14 Hb_002506_020 0.1180237347 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
15 Hb_003195_070 0.1197358065 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_007943_100 0.123877808 - - unnamed protein product [Coffea canephora]
17 Hb_000933_090 0.1239089028 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
18 Hb_165350_010 0.1280140417 - - unnamed protein product [Triticum aestivum]
19 Hb_073171_110 0.1288734412 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
20 Hb_010222_030 0.1292288067 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]

Gene co-expression network

sample Hb_174541_020 Hb_174541_020 Hb_001369_420 Hb_001369_420 Hb_174541_020--Hb_001369_420 Hb_002609_110 Hb_002609_110 Hb_174541_020--Hb_002609_110 Hb_008695_180 Hb_008695_180 Hb_174541_020--Hb_008695_180 Hb_003030_020 Hb_003030_020 Hb_174541_020--Hb_003030_020 Hb_000025_140 Hb_000025_140 Hb_174541_020--Hb_000025_140 Hb_001252_080 Hb_001252_080 Hb_174541_020--Hb_001252_080 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_008695_180--Hb_000676_110 Hb_002876_110 Hb_002876_110 Hb_008695_180--Hb_002876_110 Hb_002200_080 Hb_002200_080 Hb_008695_180--Hb_002200_080 Hb_089032_040 Hb_089032_040 Hb_008695_180--Hb_089032_040 Hb_008695_180--Hb_000051_070 Hb_073171_110 Hb_073171_110 Hb_003030_020--Hb_073171_110 Hb_000723_260 Hb_000723_260 Hb_003030_020--Hb_000723_260 Hb_185467_020 Hb_185467_020 Hb_003030_020--Hb_185467_020 Hb_000997_210 Hb_000997_210 Hb_003030_020--Hb_000997_210 Hb_012340_010 Hb_012340_010 Hb_003030_020--Hb_012340_010 Hb_001040_170 Hb_001040_170 Hb_003030_020--Hb_001040_170 Hb_002506_020 Hb_002506_020 Hb_000025_140--Hb_002506_020 Hb_048937_040 Hb_048937_040 Hb_000025_140--Hb_048937_040 Hb_007904_200 Hb_007904_200 Hb_000025_140--Hb_007904_200 Hb_006185_050 Hb_006185_050 Hb_000025_140--Hb_006185_050 Hb_000645_050 Hb_000645_050 Hb_000025_140--Hb_000645_050 Hb_001252_080--Hb_000358_150 Hb_001252_080--Hb_000676_110 Hb_001252_080--Hb_000057_040 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.1946 21.4805 11.3853 60.8006 120.513 84.491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2624 56.4947 75.4745 31.9094 23.4663

CAGE analysis