Hb_174541_030

Information

Type -
Description -
Location Contig174541: 25345-28987
Sequence    

Annotation

kegg
ID tcc:TCM_023882
description Cytochrome P450, family 98, subfamily A, polypeptide 3
nr
ID XP_007028257.1
description Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
swissprot
ID O48922
description Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1
trembl
ID A0A061F2N0
description Cytochrome P450, family 98, subfamily A, polypeptide 3 OS=Theobroma cacao GN=TCM_023882 PE=3 SV=1
Gene Ontology
ID GO:0005739
description cytochrome p450 98a2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16623: 25353-28839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174541_030 0.0 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
2 Hb_004117_020 0.0891243105 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030565_100 0.1052773782 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_000457_120 0.1125776926 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
5 Hb_000030_130 0.113227346 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_002203_020 0.1238530803 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000392_540 0.132550059 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
8 Hb_002759_030 0.133036437 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
9 Hb_003376_140 0.1336562532 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
10 Hb_011224_150 0.1346329752 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
11 Hb_001269_580 0.1356777835 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
12 Hb_000928_200 0.1361256828 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
13 Hb_001360_020 0.1364478163 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
14 Hb_003086_030 0.1372823721 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
15 Hb_000028_550 0.1379572335 - - unknown [Medicago truncatula]
16 Hb_000003_580 0.1391432082 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000251_120 0.1392467917 - - O-acetyltransferase, putative [Ricinus communis]
18 Hb_000077_100 0.1409169161 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
19 Hb_002890_110 0.1418847833 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
20 Hb_000054_010 0.1423850984 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_174541_030 Hb_174541_030 Hb_004117_020 Hb_004117_020 Hb_174541_030--Hb_004117_020 Hb_030565_100 Hb_030565_100 Hb_174541_030--Hb_030565_100 Hb_000457_120 Hb_000457_120 Hb_174541_030--Hb_000457_120 Hb_000030_130 Hb_000030_130 Hb_174541_030--Hb_000030_130 Hb_002203_020 Hb_002203_020 Hb_174541_030--Hb_002203_020 Hb_000392_540 Hb_000392_540 Hb_174541_030--Hb_000392_540 Hb_004117_020--Hb_002203_020 Hb_002384_030 Hb_002384_030 Hb_004117_020--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_004117_020--Hb_001360_020 Hb_000028_550 Hb_000028_550 Hb_004117_020--Hb_000028_550 Hb_155666_010 Hb_155666_010 Hb_004117_020--Hb_155666_010 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000928_200 Hb_000928_200 Hb_000457_120--Hb_000928_200 Hb_001936_120 Hb_001936_120 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_005305_040 Hb_005305_040 Hb_000457_120--Hb_005305_040 Hb_002759_030 Hb_002759_030 Hb_000457_120--Hb_002759_030 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000030_130--Hb_000928_200 Hb_000030_130--Hb_030565_100 Hb_005000_280 Hb_005000_280 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000392_540--Hb_011224_150 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000367_080 Hb_000367_080 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0947 55.6377 62.7884 503.665 5.15554 4.49775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2435 4.31805 5.22738 61.2871 188.06

CAGE analysis