Hb_174829_030

Information

Type -
Description -
Location Contig174829: 18557-19027
Sequence    

Annotation

kegg
ID rcu:RCOM_0340120
description hypothetical protein
nr
ID XP_002531851.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0340120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174829_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000696_120 0.0362558751 - - PREDICTED: protein FD [Populus euphratica]
3 Hb_003216_010 0.0453644909 - - glycosyl hydrolase family protein [Populus trichocarpa]
4 Hb_151027_010 0.0460738656 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
5 Hb_010080_040 0.0518750143 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001006_080 0.0537604646 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
7 Hb_003540_010 0.0544419021 - - -
8 Hb_000917_220 0.0570527695 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
9 Hb_104362_020 0.0648716433 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_005057_020 0.0761678019 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
11 Hb_000174_130 0.0801071322 - - flowering locus T-like protein [Fagus crenata]
12 Hb_166700_010 0.0821834034 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_001006_130 0.0838804919 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
14 Hb_179367_010 0.085181236 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000224_020 0.0866790839 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
16 Hb_178968_010 0.0879281569 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
17 Hb_003561_020 0.0913969041 - - gulonolactone oxidase, putative [Ricinus communis]
18 Hb_004137_090 0.0979271322 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
19 Hb_004342_040 0.0985968337 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
20 Hb_004899_380 0.1052474983 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_174829_030 Hb_174829_030 Hb_000696_120 Hb_000696_120 Hb_174829_030--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_174829_030--Hb_003216_010 Hb_151027_010 Hb_151027_010 Hb_174829_030--Hb_151027_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_003540_010 Hb_003540_010 Hb_174829_030--Hb_003540_010 Hb_000696_120--Hb_001006_080 Hb_000696_120--Hb_003216_010 Hb_000696_120--Hb_010080_040 Hb_005057_020 Hb_005057_020 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_003216_010--Hb_005057_020 Hb_003216_010--Hb_003540_010 Hb_178968_010 Hb_178968_010 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_104362_020 Hb_104362_020 Hb_151027_010--Hb_104362_020 Hb_000174_130 Hb_000174_130 Hb_151027_010--Hb_000174_130 Hb_179367_010 Hb_179367_010 Hb_151027_010--Hb_179367_010 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_004652_040 Hb_004652_040 Hb_151027_010--Hb_004652_040 Hb_010080_040--Hb_001006_080 Hb_010080_040--Hb_003216_010 Hb_003561_020 Hb_003561_020 Hb_010080_040--Hb_003561_020 Hb_010080_040--Hb_005057_020 Hb_003878_130 Hb_003878_130 Hb_001006_080--Hb_003878_130 Hb_001006_080--Hb_151027_010 Hb_001006_080--Hb_104362_020 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_178968_010 Hb_004137_090 Hb_004137_090 Hb_003540_010--Hb_004137_090 Hb_000053_150 Hb_000053_150 Hb_003540_010--Hb_000053_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.13442 3.38142 18.1325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis