Hb_174865_010

Information

Type -
Description -
Location Contig174865: 4860-6862
Sequence    

Annotation

kegg
ID rcu:RCOM_0482790
description transcription initiation factor iia (tfiia), gamma chain, putative
nr
ID XP_002527359.1
description transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
swissprot
ID Q39236
description Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2
trembl
ID B9SMZ0
description Transcription initiation factor IIA subunit 2 OS=Ricinus communis GN=RCOM_0482790 PE=3 SV=1
Gene Ontology
ID GO:0005672
description transcription initiation factor iia subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16637: 4884-6732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174865_010 0.0 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
2 Hb_000735_040 0.0463966414 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_000676_160 0.0533499089 - - folate carrier protein, putative [Ricinus communis]
4 Hb_179296_010 0.0603428993 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
5 Hb_003018_020 0.0618690754 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
6 Hb_000317_070 0.0700465917 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
7 Hb_007441_300 0.0708335805 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000506_070 0.0709186098 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
9 Hb_004157_030 0.0727753393 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
10 Hb_000093_110 0.074159569 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
11 Hb_001141_140 0.0759729403 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
12 Hb_003226_100 0.0784470074 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
13 Hb_004459_040 0.0813967096 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
14 Hb_006915_040 0.0825649076 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
15 Hb_000948_220 0.0833750329 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
16 Hb_009476_020 0.0841939158 - - tryptophan biosynthesis protein, putative [Ricinus communis]
17 Hb_026053_020 0.084644243 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
18 Hb_002798_020 0.0860527205 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
19 Hb_008921_020 0.0861925505 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
20 Hb_007120_090 0.0878037203 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]

Gene co-expression network

sample Hb_174865_010 Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_179296_010--Hb_000735_040 Hb_006915_040 Hb_006915_040 Hb_179296_010--Hb_006915_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_179296_010--Hb_000676_160 Hb_001512_080 Hb_001512_080 Hb_179296_010--Hb_001512_080 Hb_003226_100 Hb_003226_100 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_003018_020--Hb_000506_070 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_004871_020 Hb_004871_020 Hb_000317_070--Hb_004871_020 Hb_000317_070--Hb_007441_300 Hb_000317_070--Hb_000735_040 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_007441_300--Hb_003018_020 Hb_007441_300--Hb_004871_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8751 16.0834 49.3745 54.3218 26.1322 45.8378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.353 197.097 55.5736 44.0518 34.1732

CAGE analysis