Hb_174899_010

Information

Type -
Description -
Location Contig174899: 557-1600
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00320g
description hypothetical protein
nr
ID XP_012081229.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID U7E179
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174899_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_007545_070 0.0833553946 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
3 Hb_021443_060 0.0852954181 - - PTH-1 family protein [Populus trichocarpa]
4 Hb_006267_040 0.0879929085 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
5 Hb_003101_020 0.0909567564 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
6 Hb_002391_030 0.0914102962 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
7 Hb_000722_030 0.0936242633 - - putative plant disease resistance family protein [Populus trichocarpa]
8 Hb_000300_110 0.1006787444 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
9 Hb_002066_100 0.1013161387 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
10 Hb_023582_010 0.1028383764 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019053_040 0.1032219236 - - cytochrome P450, putative [Ricinus communis]
12 Hb_015044_010 0.1044399449 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
13 Hb_003043_130 0.1060063993 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
14 Hb_002042_180 0.1069552749 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
15 Hb_027684_010 0.1090139696 - - hypothetical protein RCOM_0504250 [Ricinus communis]
16 Hb_001148_110 0.1111794602 - - -
17 Hb_174168_010 0.1119434484 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_005535_070 0.1124192258 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000866_060 0.1133426875 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
20 Hb_000239_050 0.1148037761 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_174899_010 Hb_174899_010 Hb_007545_070 Hb_007545_070 Hb_174899_010--Hb_007545_070 Hb_021443_060 Hb_021443_060 Hb_174899_010--Hb_021443_060 Hb_006267_040 Hb_006267_040 Hb_174899_010--Hb_006267_040 Hb_003101_020 Hb_003101_020 Hb_174899_010--Hb_003101_020 Hb_002391_030 Hb_002391_030 Hb_174899_010--Hb_002391_030 Hb_000722_030 Hb_000722_030 Hb_174899_010--Hb_000722_030 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_000300_110 Hb_000300_110 Hb_007545_070--Hb_000300_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_000239_050 Hb_000239_050 Hb_007545_070--Hb_000239_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_000424_130 Hb_000424_130 Hb_007545_070--Hb_000424_130 Hb_092516_010 Hb_092516_010 Hb_021443_060--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_021443_060--Hb_000313_250 Hb_027684_010 Hb_027684_010 Hb_021443_060--Hb_027684_010 Hb_000358_160 Hb_000358_160 Hb_021443_060--Hb_000358_160 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_015044_010 Hb_015044_010 Hb_006267_040--Hb_015044_010 Hb_000866_060 Hb_000866_060 Hb_006267_040--Hb_000866_060 Hb_001014_240 Hb_001014_240 Hb_006267_040--Hb_001014_240 Hb_006267_040--Hb_000300_110 Hb_000128_040 Hb_000128_040 Hb_006267_040--Hb_000128_040 Hb_001439_050 Hb_001439_050 Hb_003101_020--Hb_001439_050 Hb_108576_020 Hb_108576_020 Hb_003101_020--Hb_108576_020 Hb_062807_010 Hb_062807_010 Hb_003101_020--Hb_062807_010 Hb_002518_040 Hb_002518_040 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_003101_020--Hb_000722_030 Hb_005535_070 Hb_005535_070 Hb_002391_030--Hb_005535_070 Hb_002391_030--Hb_002835_310 Hb_002391_030--Hb_007545_070 Hb_002391_030--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002391_030--Hb_001516_010 Hb_000722_030--Hb_002518_040 Hb_000722_030--Hb_023582_010 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_000722_030--Hb_027684_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0559956 1.46349 0.576953 0.0196736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.121446 0.930433

CAGE analysis