Hb_175087_010

Information

Type -
Description -
Location Contig175087: 2038-2199
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16980g
description hypothetical protein
nr
ID XP_006377988.1
description hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
swissprot
ID Q9FF99
description Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1
trembl
ID U5FXD0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s16980g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable amino acid permease 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175087_010 0.0 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
2 Hb_168039_020 0.1339754561 - - -
3 Hb_005545_090 0.1487132215 - - -
4 Hb_002290_100 0.1505795651 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_116352_010 0.155139199 - - kinase, putative [Ricinus communis]
6 Hb_001300_120 0.1603116273 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
7 Hb_028841_020 0.1611057648 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
8 Hb_003119_030 0.1643873788 - - PREDICTED: classical arabinogalactan protein 1-like [Jatropha curcas]
9 Hb_108802_010 0.1668202139 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_004712_100 0.168866236 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
11 Hb_011671_300 0.1689863858 - - 14.3 kDa oleosin [Jatropha curcas]
12 Hb_000120_140 0.1690349394 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
13 Hb_000264_200 0.1690497213 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
14 Hb_001198_070 0.1691039917 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000522_100 0.1694271373 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
16 Hb_002232_330 0.1694451854 - - -
17 Hb_008637_010 0.1695281316 - - Major latex protein, putative [Ricinus communis]
18 Hb_025248_030 0.1695980982 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
19 Hb_001373_120 0.1699755876 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
20 Hb_003766_030 0.1705426406 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_175087_010 Hb_175087_010 Hb_168039_020 Hb_168039_020 Hb_175087_010--Hb_168039_020 Hb_005545_090 Hb_005545_090 Hb_175087_010--Hb_005545_090 Hb_002290_100 Hb_002290_100 Hb_175087_010--Hb_002290_100 Hb_116352_010 Hb_116352_010 Hb_175087_010--Hb_116352_010 Hb_001300_120 Hb_001300_120 Hb_175087_010--Hb_001300_120 Hb_028841_020 Hb_028841_020 Hb_175087_010--Hb_028841_020 Hb_000510_350 Hb_000510_350 Hb_168039_020--Hb_000510_350 Hb_168039_020--Hb_002290_100 Hb_000890_190 Hb_000890_190 Hb_168039_020--Hb_000890_190 Hb_051450_010 Hb_051450_010 Hb_168039_020--Hb_051450_010 Hb_003683_090 Hb_003683_090 Hb_168039_020--Hb_003683_090 Hb_005545_090--Hb_001300_120 Hb_000856_330 Hb_000856_330 Hb_005545_090--Hb_000856_330 Hb_002481_070 Hb_002481_070 Hb_005545_090--Hb_002481_070 Hb_019952_010 Hb_019952_010 Hb_005545_090--Hb_019952_010 Hb_000523_060 Hb_000523_060 Hb_005545_090--Hb_000523_060 Hb_000507_010 Hb_000507_010 Hb_005545_090--Hb_000507_010 Hb_000473_010 Hb_000473_010 Hb_002290_100--Hb_000473_010 Hb_168436_010 Hb_168436_010 Hb_002290_100--Hb_168436_010 Hb_021409_060 Hb_021409_060 Hb_002290_100--Hb_021409_060 Hb_002127_010 Hb_002127_010 Hb_002290_100--Hb_002127_010 Hb_001268_360 Hb_001268_360 Hb_002290_100--Hb_001268_360 Hb_020367_010 Hb_020367_010 Hb_116352_010--Hb_020367_010 Hb_032966_010 Hb_032966_010 Hb_116352_010--Hb_032966_010 Hb_004712_100 Hb_004712_100 Hb_116352_010--Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_116352_010--Hb_001198_070 Hb_011671_300 Hb_011671_300 Hb_116352_010--Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_116352_010--Hb_000120_140 Hb_001300_120--Hb_000856_330 Hb_001300_120--Hb_019952_010 Hb_001300_120--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_001300_120--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_001300_120--Hb_011671_200 Hb_001568_060 Hb_001568_060 Hb_028841_020--Hb_001568_060 Hb_108802_010 Hb_108802_010 Hb_028841_020--Hb_108802_010 Hb_025030_010 Hb_025030_010 Hb_028841_020--Hb_025030_010 Hb_000175_250 Hb_000175_250 Hb_028841_020--Hb_000175_250 Hb_039650_030 Hb_039650_030 Hb_028841_020--Hb_039650_030 Hb_007433_020 Hb_007433_020 Hb_028841_020--Hb_007433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 568.31 235.922 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 43.5524 3.99292

CAGE analysis