Hb_175338_030

Information

Type -
Description -
Location Contig175338: 17304-21185
Sequence    

Annotation

kegg
ID rcu:RCOM_0760190
description hypothetical protein
nr
ID XP_012089657.1
description PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCM3
description Enhancer of polycomb-like protein OS=Jatropha curcas GN=JCGZ_01503 PE=3 SV=1
Gene Ontology
ID GO:0032777
description enhancer of polycomb-like transcription factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16778: 17166-21784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175338_030 0.0 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
2 Hb_002307_100 0.0532859008 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
3 Hb_002477_160 0.0588975908 - - hypothetical protein L484_013453 [Morus notabilis]
4 Hb_010175_020 0.0620618162 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_007757_110 0.064667709 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
6 Hb_000619_080 0.0652279229 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
7 Hb_004837_040 0.0675210885 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_000152_820 0.0698970464 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
9 Hb_000754_060 0.0724406219 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
10 Hb_000120_950 0.0738640506 - - PREDICTED: protein GRIP [Jatropha curcas]
11 Hb_002496_030 0.0759510712 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_000953_010 0.0767831838 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
13 Hb_000661_050 0.0773295161 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_001623_420 0.0786033662 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000317_020 0.0792375982 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
16 Hb_001975_160 0.0809738127 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000030_010 0.0818858972 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
18 Hb_001507_020 0.0838806607 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
19 Hb_000203_160 0.0840561149 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
20 Hb_001245_070 0.0842575013 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]

Gene co-expression network

sample Hb_175338_030 Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_175338_030--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_175338_030--Hb_002477_160 Hb_010175_020 Hb_010175_020 Hb_175338_030--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_002307_100--Hb_002477_160 Hb_002307_100--Hb_007757_110 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_000152_820 Hb_000152_820 Hb_010175_020--Hb_000152_820 Hb_010175_020--Hb_007757_110 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_007757_110--Hb_000152_820 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_000619_080--Hb_002307_100 Hb_000619_080--Hb_007757_110 Hb_000619_080--Hb_010175_020 Hb_000619_080--Hb_002477_160 Hb_001975_160 Hb_001975_160 Hb_000619_080--Hb_001975_160 Hb_000062_240 Hb_000062_240 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6819 23.4147 8.52778 9.54805 31.1631 31.7894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.349 20.2713 40.6467 13.6059 11.2137

CAGE analysis