Hb_175445_010

Information

Type -
Description -
Location Contig175445: 1414-1936
Sequence    

Annotation

kegg
ID rcu:RCOM_0537800
description Pectinesterase precursor, putative (EC:3.1.1.11)
nr
ID XP_007032612.1
description Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
swissprot
ID Q9LVQ0
description Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1
trembl
ID A0A061EFV4
description Pectinesterase (Fragment) OS=Theobroma cacao GN=TCM_018652 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175445_010 0.0 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
2 Hb_003756_010 0.143671334 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
3 Hb_007810_050 0.1597368925 - - protein with unknown function [Ricinus communis]
4 Hb_003253_010 0.160291708 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
5 Hb_001980_020 0.160725877 - - -
6 Hb_004060_010 0.1617875152 - - -
7 Hb_010098_080 0.1702638553 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
8 Hb_002477_230 0.1720550607 - - PREDICTED: verprolin [Jatropha curcas]
9 Hb_116349_150 0.184224601 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_007849_030 0.1856330175 - - l-allo-threonine aldolase, putative [Ricinus communis]
11 Hb_000352_150 0.1874095874 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
12 Hb_007810_060 0.1878868351 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000500_310 0.1882895474 - - -
14 Hb_003636_090 0.1949000966 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
15 Hb_003777_070 0.1958227695 - - -
16 Hb_003327_060 0.1984685486 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
17 Hb_001140_160 0.1984873887 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_000928_230 0.1985720788 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002875_090 0.2027968817 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002235_220 0.2035301247 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]

Gene co-expression network

sample Hb_175445_010 Hb_175445_010 Hb_003756_010 Hb_003756_010 Hb_175445_010--Hb_003756_010 Hb_007810_050 Hb_007810_050 Hb_175445_010--Hb_007810_050 Hb_003253_010 Hb_003253_010 Hb_175445_010--Hb_003253_010 Hb_001980_020 Hb_001980_020 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_010098_080 Hb_010098_080 Hb_175445_010--Hb_010098_080 Hb_010872_060 Hb_010872_060 Hb_003756_010--Hb_010872_060 Hb_012799_060 Hb_012799_060 Hb_003756_010--Hb_012799_060 Hb_001140_160 Hb_001140_160 Hb_003756_010--Hb_001140_160 Hb_000078_030 Hb_000078_030 Hb_003756_010--Hb_000078_030 Hb_000699_020 Hb_000699_020 Hb_003756_010--Hb_000699_020 Hb_007810_050--Hb_003253_010 Hb_002477_230 Hb_002477_230 Hb_007810_050--Hb_002477_230 Hb_003777_070 Hb_003777_070 Hb_007810_050--Hb_003777_070 Hb_007810_050--Hb_010098_080 Hb_007810_050--Hb_001980_020 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_003777_070 Hb_003253_010--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_000352_150 Hb_000352_150 Hb_001980_020--Hb_000352_150 Hb_001980_020--Hb_003777_070 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_004060_010--Hb_000352_150 Hb_004060_010--Hb_001980_020 Hb_004060_010--Hb_002875_090 Hb_003636_090 Hb_003636_090 Hb_004060_010--Hb_003636_090 Hb_004060_010--Hb_003756_010 Hb_010098_080--Hb_000500_310 Hb_010098_080--Hb_003777_070 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3623 0 0.0876819 0 8.60256 18.1252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.518 20.3426 10.3023 1.16702 0.322292

CAGE analysis