Hb_175572_010

Information

Type -
Description -
Location Contig175572: 1759-6422
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175572_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_003116_020 0.1210837725 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
3 Hb_000107_640 0.1335685385 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000395_060 0.204754899 - - -
5 Hb_007761_050 0.2201669613 - - calcineurin-like protein [Hevea brasiliensis]
6 Hb_001257_020 0.232402716 - - -
7 Hb_088496_010 0.2359361991 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
8 Hb_004297_030 0.2374551814 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
9 Hb_000003_770 0.2605394063 - - -
10 Hb_002636_020 0.2619488405 - - -
11 Hb_148262_020 0.2669077385 - - -
12 Hb_005408_040 0.2698262672 - - -
13 Hb_001379_130 0.2759839461 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
14 Hb_005009_020 0.278929627 - - -
15 Hb_000270_150 0.2905167453 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_000847_140 0.2936449222 - - -
17 Hb_015091_010 0.2949852909 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_000284_070 0.2975839785 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_017436_010 0.3061074006 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003602_050 0.3091335244 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_175572_010 Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_175572_010--Hb_003116_020 Hb_000107_640 Hb_000107_640 Hb_175572_010--Hb_000107_640 Hb_000395_060 Hb_000395_060 Hb_175572_010--Hb_000395_060 Hb_007761_050 Hb_007761_050 Hb_175572_010--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_175572_010--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_175572_010--Hb_088496_010 Hb_003116_020--Hb_000107_640 Hb_015091_010 Hb_015091_010 Hb_003116_020--Hb_015091_010 Hb_004297_030 Hb_004297_030 Hb_003116_020--Hb_004297_030 Hb_003116_020--Hb_088496_010 Hb_063511_010 Hb_063511_010 Hb_003116_020--Hb_063511_010 Hb_000107_640--Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000107_640--Hb_005408_040 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_005009_020 Hb_005009_020 Hb_000107_640--Hb_005009_020 Hb_000395_060--Hb_005408_040 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_000395_060--Hb_005009_020 Hb_007761_050--Hb_001257_020 Hb_000284_070 Hb_000284_070 Hb_007761_050--Hb_000284_070 Hb_007761_050--Hb_088496_010 Hb_148262_020 Hb_148262_020 Hb_007761_050--Hb_148262_020 Hb_000003_770 Hb_000003_770 Hb_007761_050--Hb_000003_770 Hb_007761_050--Hb_004297_030 Hb_001257_020--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_001257_020--Hb_001379_130 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_088496_010 Hb_001257_020--Hb_004297_030 Hb_088496_010--Hb_004297_030 Hb_088496_010--Hb_000003_770 Hb_094721_010 Hb_094721_010 Hb_088496_010--Hb_094721_010 Hb_088496_010--Hb_001379_130 Hb_012324_020 Hb_012324_020 Hb_088496_010--Hb_012324_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00825161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0205452 0.00808428 0 0.00320129 0

CAGE analysis