Hb_175612_010

Information

Type transcription factor
Description TF Family: MBF1
Location Contig175612: 831-1598
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40090g
description putative transcriptional coactivator family protein
nr
ID CAA89698.1
description orf [Ricinus communis]
swissprot
ID Q9SJI8
description Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1
trembl
ID O24327
description Orf protein OS=Ricinus communis GN=orf PE=2 SV=1
Gene Ontology
ID GO:0043565
description multiprotein-bridging factor 1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16829: 1-1893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175612_010 0.0 transcription factor TF Family: MBF1 orf [Ricinus communis]
2 Hb_007534_040 0.0689946661 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
3 Hb_000617_220 0.0921287327 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_000175_390 0.0967742831 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
5 Hb_000236_300 0.0979479331 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
6 Hb_004447_030 0.0984671979 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
7 Hb_000156_140 0.0999398073 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
8 Hb_000209_090 0.1013150464 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_009411_020 0.1018466705 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
10 Hb_001616_090 0.103217376 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
11 Hb_003091_010 0.10376858 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
12 Hb_001754_170 0.1046258207 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
13 Hb_173178_020 0.1081101783 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
14 Hb_002774_070 0.1094521016 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
15 Hb_004525_100 0.1115248505 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
16 Hb_000363_340 0.1128306235 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
17 Hb_000072_140 0.1137573383 - - -
18 Hb_001663_110 0.1144380081 - - RNA binding protein, putative [Ricinus communis]
19 Hb_011848_010 0.1160259108 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
20 Hb_012132_040 0.117210794 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]

Gene co-expression network

sample Hb_175612_010 Hb_175612_010 Hb_007534_040 Hb_007534_040 Hb_175612_010--Hb_007534_040 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_000175_390 Hb_000175_390 Hb_175612_010--Hb_000175_390 Hb_000236_300 Hb_000236_300 Hb_175612_010--Hb_000236_300 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_000035_400 Hb_000035_400 Hb_007534_040--Hb_000035_400 Hb_000209_090 Hb_000209_090 Hb_007534_040--Hb_000209_090 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_001754_170 Hb_001754_170 Hb_007534_040--Hb_001754_170 Hb_003091_010 Hb_003091_010 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_000088_200 Hb_000088_200 Hb_000175_390--Hb_000088_200 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_000175_390--Hb_000156_140 Hb_000236_300--Hb_000209_090 Hb_004204_200 Hb_004204_200 Hb_000236_300--Hb_004204_200 Hb_000236_300--Hb_007534_040 Hb_005735_030 Hb_005735_030 Hb_000236_300--Hb_005735_030 Hb_000236_300--Hb_001754_170 Hb_000205_120 Hb_000205_120 Hb_004447_030--Hb_000205_120 Hb_001663_110 Hb_001663_110 Hb_004447_030--Hb_001663_110 Hb_000976_270 Hb_000976_270 Hb_004447_030--Hb_000976_270 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_000265_150 Hb_000265_150 Hb_004447_030--Hb_000265_150 Hb_000529_080 Hb_000529_080 Hb_004447_030--Hb_000529_080 Hb_000156_140--Hb_009411_020 Hb_002774_070 Hb_002774_070 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2803.54 894.312 869.22 994.077 3379.05 3877.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1171.34 1651.25 647.792 454.575 197.381

CAGE analysis