Hb_175933_010

Information

Type -
Description -
Location Contig175933: 722-2454
Sequence    

Annotation

kegg
ID rcu:RCOM_0991600
description NADH-ubiquinone oxidoreductase 24 kD subunit, putative (EC:1.6.5.3)
nr
ID XP_002520977.1
description NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
swissprot
ID O22769
description NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=2 SV=3
trembl
ID B9S4S0
description NADH-ubiquinone oxidoreductase 24 kD subunit, putative OS=Ricinus communis GN=RCOM_0991600 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175933_010 0.0 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
2 Hb_000240_120 0.1347570754 - - ras-related protein Rab-5B [Reticulomyxa filosa]
3 Hb_001208_030 0.1382661962 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008206_100 0.1394955263 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
5 Hb_032972_010 0.1441056536 - - Glycolipid transfer protein, putative [Ricinus communis]
6 Hb_001208_040 0.1524269499 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
7 Hb_001969_020 0.1570142874 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
8 Hb_000016_060 0.1575620831 - - mads box protein, putative [Ricinus communis]
9 Hb_002154_110 0.1619878482 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_000260_280 0.1675011304 - - auxin:hydrogen symporter, putative [Ricinus communis]
11 Hb_001163_040 0.1679326043 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
12 Hb_000483_400 0.1723909635 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
13 Hb_003103_010 0.1747403291 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003994_020 0.1792617918 - - -
15 Hb_002631_260 0.1804171181 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
16 Hb_000217_010 0.1815544853 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
17 Hb_006452_110 0.1819202231 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
18 Hb_000023_290 0.1839287797 - - steroid binding protein, putative [Ricinus communis]
19 Hb_000683_100 0.1845013999 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
20 Hb_000796_020 0.1848476542 - - ADP-ribosylation factor [Phaseolus vulgaris]

Gene co-expression network

sample Hb_175933_010 Hb_175933_010 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_001208_030 Hb_001208_030 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_011512_050 Hb_011512_050 Hb_000240_120--Hb_011512_050 Hb_001163_040 Hb_001163_040 Hb_000240_120--Hb_001163_040 Hb_132180_010 Hb_132180_010 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_000240_120--Hb_001208_030 Hb_001208_030--Hb_001208_040 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_008206_100--Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_008206_100--Hb_003103_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_003994_020 Hb_003994_020 Hb_008206_100--Hb_003994_020 Hb_008206_100--Hb_008642_030 Hb_000260_280 Hb_000260_280 Hb_032972_010--Hb_000260_280 Hb_000683_100 Hb_000683_100 Hb_032972_010--Hb_000683_100 Hb_000027_210 Hb_000027_210 Hb_032972_010--Hb_000027_210 Hb_032972_010--Hb_001208_030 Hb_032972_010--Hb_001208_040 Hb_002960_130 Hb_002960_130 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020 Hb_001969_020--Hb_000683_100 Hb_010577_010 Hb_010577_010 Hb_001969_020--Hb_010577_010 Hb_001969_020--Hb_000016_060 Hb_000369_120 Hb_000369_120 Hb_001969_020--Hb_000369_120 Hb_001969_020--Hb_002960_130 Hb_001969_020--Hb_001163_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29722 3.30284 9.04935 94.2209 2.85971 12.7966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5248 40.9401 18.965 18.7458 11.7523

CAGE analysis