Hb_175976_010

Information

Type -
Description -
Location Contig175976: 39-437
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175976_010 0.0 - - -
2 Hb_010368_030 0.0998767176 - - BnaA07g35570D [Brassica napus]
3 Hb_008221_110 0.1083281353 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
4 Hb_007534_020 0.1159292188 - - -
5 Hb_000120_190 0.1239508015 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
6 Hb_000127_090 0.1242855624 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001017_060 0.1355777684 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_000258_030 0.1453713084 - - -
9 Hb_166480_010 0.1459081536 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
10 Hb_007763_050 0.1490299271 - - hypothetical protein L484_012752 [Morus notabilis]
11 Hb_002482_060 0.1525874375 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
12 Hb_000493_010 0.1543578293 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
13 Hb_006995_040 0.1561571814 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
14 Hb_000648_030 0.1619708747 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
15 Hb_002784_070 0.1671010207 - - BnaUnng01470D [Brassica napus]
16 Hb_042710_010 0.1702286006 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_001396_250 0.1731416781 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
18 Hb_014834_040 0.1736101023 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
19 Hb_011214_100 0.1773433123 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
20 Hb_001296_030 0.1813169955 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]

Gene co-expression network

sample Hb_175976_010 Hb_175976_010 Hb_010368_030 Hb_010368_030 Hb_175976_010--Hb_010368_030 Hb_008221_110 Hb_008221_110 Hb_175976_010--Hb_008221_110 Hb_007534_020 Hb_007534_020 Hb_175976_010--Hb_007534_020 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_000127_090 Hb_000127_090 Hb_175976_010--Hb_000127_090 Hb_001017_060 Hb_001017_060 Hb_175976_010--Hb_001017_060 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_010368_030--Hb_000120_190 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_166480_010 Hb_166480_010 Hb_010368_030--Hb_166480_010 Hb_008221_110--Hb_000127_090 Hb_008221_110--Hb_001017_060 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_008221_110--Hb_010368_030 Hb_008221_110--Hb_007534_020 Hb_007534_020--Hb_001017_060 Hb_007534_020--Hb_000127_090 Hb_006065_040 Hb_006065_040 Hb_007534_020--Hb_006065_040 Hb_002482_060 Hb_002482_060 Hb_000120_190--Hb_002482_060 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_006198_090 Hb_006198_090 Hb_000120_190--Hb_006198_090 Hb_000127_090--Hb_166480_010 Hb_000258_030 Hb_000258_030 Hb_000127_090--Hb_000258_030 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000127_090--Hb_000120_190 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_011644_010 Hb_011644_010 Hb_001017_060--Hb_011644_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18151 0.405967 1.95144 44.9718 6.39102 102.091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.4411 60.7303 22.5709 11.453 6.96384

CAGE analysis