Hb_176022_010

Information

Type -
Description -
Location Contig176022: 6648-7234
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176022_010 0.0 - - -
2 Hb_002490_050 0.1550542529 - - Os02g0182500, partial [Oryza sativa Japonica Group]
3 Hb_011360_100 0.2258352224 - - -
4 Hb_059069_010 0.2260402918 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
5 Hb_038675_010 0.226095959 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
6 Hb_004458_050 0.2265637602 - - -
7 Hb_005741_010 0.2269959919 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
8 Hb_012194_010 0.2285920256 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_000195_050 0.2312537237 - - -
10 Hb_006275_030 0.2329470472 - - -
11 Hb_000574_020 0.2336985802 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000831_040 0.234035109 - - -
13 Hb_002463_080 0.2357592869 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003556_020 0.2366855526 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
15 Hb_063912_010 0.2380170504 - - PREDICTED: elongation factor 1-alpha-like, partial [Cucumis sativus]
16 Hb_000563_290 0.2406673865 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
17 Hb_002490_040 0.2535253906 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
18 Hb_010222_010 0.2543881363 - - -
19 Hb_000188_090 0.255869264 - - JHL22C18.10 [Jatropha curcas]
20 Hb_009265_020 0.2578275889 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_176022_010 Hb_176022_010 Hb_002490_050 Hb_002490_050 Hb_176022_010--Hb_002490_050 Hb_011360_100 Hb_011360_100 Hb_176022_010--Hb_011360_100 Hb_059069_010 Hb_059069_010 Hb_176022_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_176022_010--Hb_038675_010 Hb_004458_050 Hb_004458_050 Hb_176022_010--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_176022_010--Hb_005741_010 Hb_002490_050--Hb_038675_010 Hb_002490_050--Hb_059069_010 Hb_000195_050 Hb_000195_050 Hb_002490_050--Hb_000195_050 Hb_002490_050--Hb_011360_100 Hb_009265_020 Hb_009265_020 Hb_002490_050--Hb_009265_020 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_059069_010 Hb_011360_100--Hb_038675_010 Hb_011360_100--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_059069_010--Hb_038675_010 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_000195_050 Hb_059069_010--Hb_012194_010 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_038675_010--Hb_000195_050 Hb_038675_010--Hb_012194_010 Hb_004458_050--Hb_005741_010 Hb_004458_050--Hb_012194_010 Hb_004458_050--Hb_006275_030 Hb_005741_010--Hb_012194_010 Hb_005741_010--Hb_006275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40775 0 0 0 0 4.77782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.783182 0 0

CAGE analysis