Hb_176022_020

Information

Type -
Description -
Location Contig176022: 9756-10850
Sequence    

Annotation

kegg
ID rcu:RCOM_1517780
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002524040.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q42602
description Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2
trembl
ID B9SDH1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1517780 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 89a2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16881: 9765-10400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176022_020 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_003404_030 0.0824866452 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_019613_020 0.0907693138 - - phospholipase C, putative [Ricinus communis]
4 Hb_012055_020 0.0914973119 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
5 Hb_000088_040 0.0922722668 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
6 Hb_040996_010 0.0945134838 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
7 Hb_000005_050 0.0978603511 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
8 Hb_000230_110 0.0985366256 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
9 Hb_002506_010 0.0992946584 - - choline transporter-related family protein [Populus trichocarpa]
10 Hb_000057_060 0.1035824165 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
11 Hb_000208_240 0.103856104 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
12 Hb_002067_160 0.1065524238 - - Protein MLO, putative [Ricinus communis]
13 Hb_001102_110 0.1068882019 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
14 Hb_004156_060 0.1073928179 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
15 Hb_004126_010 0.1094067319 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
16 Hb_005488_070 0.1110176546 - - putative cytochrome P450 [Oryza sativa Japonica Group]
17 Hb_001476_100 0.1120854444 - - conserved hypothetical protein [Ricinus communis]
18 Hb_127979_010 0.1140328219 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
19 Hb_000249_110 0.1164327476 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
20 Hb_009510_030 0.1170414604 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_176022_020 Hb_176022_020 Hb_003404_030 Hb_003404_030 Hb_176022_020--Hb_003404_030 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_012055_020 Hb_012055_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_035524_030 Hb_035524_030 Hb_019613_020--Hb_035524_030 Hb_019613_020--Hb_127979_010 Hb_000085_280 Hb_000085_280 Hb_019613_020--Hb_000085_280 Hb_019613_020--Hb_003404_030 Hb_019613_020--Hb_000057_060 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_000230_110 Hb_000230_110 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_000088_040--Hb_000230_110 Hb_000088_040--Hb_003404_030 Hb_000088_040--Hb_012055_020 Hb_098993_010 Hb_098993_010 Hb_000088_040--Hb_098993_010 Hb_000088_040--Hb_005227_070 Hb_040996_010--Hb_012055_020 Hb_040996_010--Hb_000057_060 Hb_040996_010--Hb_019613_020 Hb_000599_120 Hb_000599_120 Hb_040996_010--Hb_000599_120 Hb_040996_010--Hb_000005_050 Hb_011021_030 Hb_011021_030 Hb_000005_050--Hb_011021_030 Hb_000005_050--Hb_019613_020 Hb_000005_050--Hb_000984_180 Hb_000005_050--Hb_003404_030 Hb_011316_030 Hb_011316_030 Hb_000005_050--Hb_011316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
336.73 20.4308 5.72952 56.5994 336.765 380.832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.052 109.361 308.184 48.8697 31.3276

CAGE analysis