Hb_176117_010

Information

Type -
Description -
Location Contig176117: 639-941
Sequence    

Annotation

kegg
ID fve:101293904
description glycine-rich RNA-binding protein 2, mitochondrial-like
nr
ID XP_010093775.1
description Cold-inducible RNA-binding protein [Morus notabilis]
swissprot
ID Q5RF83
description Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1
trembl
ID W9RGT6
description Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_019178 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16897: 417-929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176117_010 0.0 - - Cold-inducible RNA-binding protein [Morus notabilis]
2 Hb_181320_010 0.0774459229 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
3 Hb_005016_150 0.1426851055 - - -
4 Hb_000270_500 0.1450581384 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
5 Hb_144898_010 0.1454313967 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_000200_040 0.1548657037 - - -
7 Hb_183980_010 0.1558750398 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
8 Hb_012807_080 0.1624060615 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
9 Hb_004662_010 0.1634344609 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
10 Hb_000891_040 0.1643069134 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
11 Hb_000213_060 0.1750040261 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
12 Hb_000953_060 0.1751562473 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
13 Hb_001523_010 0.1800691226 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
14 Hb_003859_010 0.1825752179 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
15 Hb_001722_020 0.183772019 - - -
16 Hb_010189_010 0.1861290163 - - -
17 Hb_002837_070 0.1862766107 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
18 Hb_003297_020 0.1869558203 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_002955_010 0.1877526896 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
20 Hb_003633_130 0.1902626429 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]

Gene co-expression network

sample Hb_176117_010 Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_176117_010--Hb_181320_010 Hb_005016_150 Hb_005016_150 Hb_176117_010--Hb_005016_150 Hb_000270_500 Hb_000270_500 Hb_176117_010--Hb_000270_500 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_000200_040 Hb_000200_040 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_181320_010--Hb_144898_010 Hb_181320_010--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_181320_010--Hb_000270_500 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_000213_060 Hb_000213_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_000270_500--Hb_005016_150 Hb_007827_020 Hb_007827_020 Hb_000270_500--Hb_007827_020 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_000200_040--Hb_012807_080 Hb_006455_110 Hb_006455_110 Hb_000200_040--Hb_006455_110 Hb_005965_010 Hb_005965_010 Hb_000200_040--Hb_005965_010 Hb_006455_080 Hb_006455_080 Hb_000200_040--Hb_006455_080 Hb_139859_010 Hb_139859_010 Hb_000200_040--Hb_139859_010 Hb_000125_040 Hb_000125_040 Hb_183980_010--Hb_000125_040 Hb_183980_010--Hb_000200_040 Hb_023327_030 Hb_023327_030 Hb_183980_010--Hb_023327_030 Hb_001582_030 Hb_001582_030 Hb_183980_010--Hb_001582_030 Hb_077211_010 Hb_077211_010 Hb_183980_010--Hb_077211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
295.363 86.9178 57.9964 37.7314 250.491 775.421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.177 196.92 55.022 36.0689 3.0339

CAGE analysis