Hb_176140_010

Information

Type -
Description -
Location Contig176140: 6845-10586
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176140_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_001779_050 0.0009244222 - - polyprotein [Ananas comosus]
3 Hb_001338_010 0.0134773425 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
4 Hb_000031_070 0.0182440468 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
5 Hb_158575_010 0.0244675223 - - conserved hypothetical protein [Ricinus communis]
6 Hb_157680_010 0.0250660414 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
7 Hb_004453_120 0.0279330234 - - ammonium transporter, putative [Ricinus communis]
8 Hb_003882_030 0.0459694301 - - putative retrotransposon protein [Phyllostachys edulis]
9 Hb_002874_250 0.0507247862 - - -
10 Hb_000010_230 0.052479048 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
11 Hb_003477_020 0.0654022295 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
12 Hb_151061_040 0.0712282439 - - putative retrotransposon protein [Phyllostachys edulis]
13 Hb_004138_020 0.0844683263 - - PREDICTED: cucumisin-like [Populus euphratica]
14 Hb_005087_020 0.0855148523 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_001081_070 0.0931232324 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
16 Hb_184398_010 0.101893927 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_001681_010 0.1056204689 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
18 Hb_125153_010 0.1060975225 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
19 Hb_054839_010 0.1093163486 - - PsbC, partial (chloroplast) [Asimina parviflora]
20 Hb_007645_040 0.1110740196 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]

Gene co-expression network

sample Hb_176140_010 Hb_176140_010 Hb_001779_050 Hb_001779_050 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070 Hb_158575_010 Hb_158575_010 Hb_176140_010--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_176140_010--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_176140_010--Hb_004453_120 Hb_001779_050--Hb_001338_010 Hb_001779_050--Hb_000031_070 Hb_001779_050--Hb_158575_010 Hb_001779_050--Hb_157680_010 Hb_001779_050--Hb_004453_120 Hb_001338_010--Hb_000031_070 Hb_001338_010--Hb_158575_010 Hb_001338_010--Hb_157680_010 Hb_001338_010--Hb_004453_120 Hb_000031_070--Hb_158575_010 Hb_000031_070--Hb_157680_010 Hb_000031_070--Hb_004453_120 Hb_158575_010--Hb_157680_010 Hb_158575_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_158575_010--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_158575_010--Hb_002874_250 Hb_157680_010--Hb_004453_120 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_002874_250 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00531672 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0808563

CAGE analysis