Hb_176472_020

Information

Type -
Description -
Location Contig176472: 855-1886
Sequence    

Annotation

kegg
ID rcu:RCOM_1385680
description hypothetical protein
nr
ID XP_002520602.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3N3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1385680 PE=4 SV=1
Gene Ontology
ID GO:0016021
description extended synaptotagmin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16906: 2144-2707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176472_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002218_100 0.1250276151 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
3 Hb_002217_190 0.1378112179 - - invertase [Hevea brasiliensis]
4 Hb_007545_110 0.1392249766 - - catalytic, putative [Ricinus communis]
5 Hb_004449_140 0.1475121367 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
6 Hb_006775_070 0.1500461783 - - zinc finger protein, putative [Ricinus communis]
7 Hb_008173_060 0.1505416364 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_001007_090 0.1533655452 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
9 Hb_000120_350 0.1602867677 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
10 Hb_001214_190 0.1609418043 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
11 Hb_000134_030 0.1613842733 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
12 Hb_000032_200 0.162146367 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_000185_230 0.1630307108 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_005211_150 0.1642402823 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
15 Hb_000347_140 0.1688094369 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000732_030 0.1704732672 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003938_170 0.1706379386 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
18 Hb_000521_190 0.1719726027 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
19 Hb_000959_190 0.1729166431 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
20 Hb_003430_040 0.1740021014 - - spermidine synthase 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_176472_020 Hb_176472_020 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_000123_140 Hb_000123_140 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_000260_610 Hb_000260_610 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_001214_190 Hb_001214_190 Hb_004449_140--Hb_001214_190 Hb_003430_040 Hb_003430_040 Hb_004449_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_004449_140--Hb_074792_010 Hb_003938_170 Hb_003938_170 Hb_004449_140--Hb_003938_170 Hb_004449_140--Hb_002218_100 Hb_006775_070--Hb_000959_190 Hb_006775_070--Hb_000260_610 Hb_012787_030 Hb_012787_030 Hb_006775_070--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_006775_070--Hb_000732_030 Hb_002518_200 Hb_002518_200 Hb_006775_070--Hb_002518_200 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26422 20.0107 70.318 18.0413 3.16854 2.41492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.32391 6.35994 2.26364 1.79352 5.17215

CAGE analysis