Hb_176681_010

Information

Type -
Description -
Location Contig176681: 2938-7126
Sequence    

Annotation

kegg
ID rcu:RCOM_0607350
description hypothetical protein
nr
ID XP_011002267.1
description PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID B9SYB1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16946: 6315-6523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176681_010 0.0 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
2 Hb_003976_010 0.1113188943 - - methionine aminopeptidase, putative [Ricinus communis]
3 Hb_002449_020 0.1150721836 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
4 Hb_034299_060 0.1160917525 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
5 Hb_001277_330 0.1161959913 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
6 Hb_022216_020 0.1165027467 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_004108_050 0.1172211182 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
8 Hb_000402_200 0.1184491587 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
9 Hb_163145_020 0.1198675119 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
10 Hb_002216_040 0.1207222068 - - PREDICTED: protein PRD1 [Jatropha curcas]
11 Hb_002253_070 0.1211172485 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
12 Hb_002835_410 0.121164484 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
13 Hb_002681_110 0.1218751691 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
14 Hb_000429_170 0.1230085819 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
15 Hb_010638_020 0.1233167615 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
16 Hb_004993_050 0.1241377548 - - -
17 Hb_026527_030 0.1249752759 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_004994_100 0.1258961294 - - acyl-CoA thioesterase, putative [Ricinus communis]
19 Hb_002687_110 0.1259237149 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
20 Hb_001248_130 0.1268805963 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_176681_010 Hb_176681_010 Hb_003976_010 Hb_003976_010 Hb_176681_010--Hb_003976_010 Hb_002449_020 Hb_002449_020 Hb_176681_010--Hb_002449_020 Hb_034299_060 Hb_034299_060 Hb_176681_010--Hb_034299_060 Hb_001277_330 Hb_001277_330 Hb_176681_010--Hb_001277_330 Hb_022216_020 Hb_022216_020 Hb_176681_010--Hb_022216_020 Hb_004108_050 Hb_004108_050 Hb_176681_010--Hb_004108_050 Hb_003976_010--Hb_022216_020 Hb_006400_030 Hb_006400_030 Hb_003976_010--Hb_006400_030 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_172632_090 Hb_172632_090 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_007426_230 Hb_007426_230 Hb_003976_010--Hb_007426_230 Hb_000174_090 Hb_000174_090 Hb_002449_020--Hb_000174_090 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_000832_140 Hb_000832_140 Hb_002449_020--Hb_000832_140 Hb_000529_190 Hb_000529_190 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090 Hb_000429_170 Hb_000429_170 Hb_034299_060--Hb_000429_170 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_003151_050 Hb_003151_050 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_000622_040 Hb_000622_040 Hb_034299_060--Hb_000622_040 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_018790_060 Hb_018790_060 Hb_022216_020--Hb_018790_060 Hb_002835_410 Hb_002835_410 Hb_022216_020--Hb_002835_410 Hb_022216_020--Hb_000174_090 Hb_022216_020--Hb_007426_230 Hb_004108_050--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_004108_050--Hb_000085_310 Hb_026988_020 Hb_026988_020 Hb_004108_050--Hb_026988_020 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_023386_080 Hb_023386_080 Hb_004108_050--Hb_023386_080 Hb_004108_050--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8217 3.18222 2.46104 6.30021 16.8813 7.21858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1507 13.481 21.0529 9.78635 3.61488

CAGE analysis