Hb_177020_010

Information

Type -
Description -
Location Contig177020: 41-1771
Sequence    

Annotation

kegg
ID sly:104648339
description uncharacterized LOC104648339
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177020_010 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_042175_010 0.2466257209 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
3 Hb_002233_020 0.2499431593 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_004545_100 0.2504227944 - - PREDICTED: protein BONZAI 3 [Jatropha curcas]
5 Hb_004800_190 0.2532183603 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
6 Hb_001769_130 0.262647753 - - -
7 Hb_001310_100 0.2633207272 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
8 Hb_000538_190 0.2651461735 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
9 Hb_007259_020 0.267207722 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
10 Hb_004631_130 0.2676056576 - - helicase domain-containing family protein [Populus trichocarpa]
11 Hb_001377_250 0.2687017669 - - dynamin, putative [Ricinus communis]
12 Hb_002475_130 0.272803063 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
13 Hb_001102_170 0.2730721383 - - PREDICTED: protein FLX-like 1 [Jatropha curcas]
14 Hb_002485_040 0.2744483325 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
15 Hb_000126_070 0.2746914021 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
16 Hb_003849_260 0.2748923727 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
17 Hb_020178_050 0.275396257 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
18 Hb_000010_350 0.2805034591 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
19 Hb_013818_040 0.280926247 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
20 Hb_006111_030 0.2811437289 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_177020_010 Hb_177020_010 Hb_042175_010 Hb_042175_010 Hb_177020_010--Hb_042175_010 Hb_002233_020 Hb_002233_020 Hb_177020_010--Hb_002233_020 Hb_004545_100 Hb_004545_100 Hb_177020_010--Hb_004545_100 Hb_004800_190 Hb_004800_190 Hb_177020_010--Hb_004800_190 Hb_001769_130 Hb_001769_130 Hb_177020_010--Hb_001769_130 Hb_001310_100 Hb_001310_100 Hb_177020_010--Hb_001310_100 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_001141_360 Hb_001141_360 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_001863_150 Hb_001863_150 Hb_042175_010--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_000866_370 Hb_000866_370 Hb_002233_020--Hb_000866_370 Hb_003398_070 Hb_003398_070 Hb_002233_020--Hb_003398_070 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_002233_020--Hb_003060_090 Hb_002475_130 Hb_002475_130 Hb_004545_100--Hb_002475_130 Hb_008864_080 Hb_008864_080 Hb_004545_100--Hb_008864_080 Hb_007259_020 Hb_007259_020 Hb_004545_100--Hb_007259_020 Hb_002793_060 Hb_002793_060 Hb_004545_100--Hb_002793_060 Hb_011885_010 Hb_011885_010 Hb_004545_100--Hb_011885_010 Hb_033642_070 Hb_033642_070 Hb_004545_100--Hb_033642_070 Hb_009897_020 Hb_009897_020 Hb_004800_190--Hb_009897_020 Hb_004800_190--Hb_001141_360 Hb_003849_260 Hb_003849_260 Hb_004800_190--Hb_003849_260 Hb_004800_190--Hb_001865_060 Hb_162074_010 Hb_162074_010 Hb_004800_190--Hb_162074_010 Hb_003494_060 Hb_003494_060 Hb_004800_190--Hb_003494_060 Hb_044086_010 Hb_044086_010 Hb_001769_130--Hb_044086_010 Hb_000812_030 Hb_000812_030 Hb_001769_130--Hb_000812_030 Hb_005401_010 Hb_005401_010 Hb_001769_130--Hb_005401_010 Hb_000671_140 Hb_000671_140 Hb_001769_130--Hb_000671_140 Hb_001769_130--Hb_004545_100 Hb_004074_030 Hb_004074_030 Hb_001769_130--Hb_004074_030 Hb_001310_100--Hb_007259_020 Hb_001310_100--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_001310_100--Hb_000233_100 Hb_000532_130 Hb_000532_130 Hb_001310_100--Hb_000532_130 Hb_002232_050 Hb_002232_050 Hb_001310_100--Hb_002232_050 Hb_006103_040 Hb_006103_040 Hb_001310_100--Hb_006103_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0297233 0.231644 0.0332081 0 0.0278397 0.0562472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0338814 0 0 0.0532508 0.0555908

CAGE analysis