Hb_177103_010

Information

Type -
Description -
Location Contig177103: 47-313
Sequence    

Annotation

kegg
ID pda:103697247
description histone H2AX
nr
ID XP_010938857.1
description PREDICTED: histone H2AX [Elaeis guineensis]
swissprot
ID P35063
description Histone H2AX OS=Picea abies PE=2 SV=1
trembl
ID A0A059B728
description Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_H04433 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177103_010 0.0 - - PREDICTED: histone H2AX [Elaeis guineensis]
2 Hb_169170_010 0.1115330766 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
3 Hb_007188_030 0.1250127417 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
4 Hb_006198_090 0.1327988381 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
5 Hb_003656_150 0.1396070568 - - -
6 Hb_005679_070 0.1425839816 - - hypothetical protein M569_07741, partial [Genlisea aurea]
7 Hb_068014_010 0.1443773617 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
8 Hb_010565_040 0.1525602714 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
9 Hb_002815_050 0.1602068068 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
10 Hb_003029_100 0.1609336308 - - -
11 Hb_001998_140 0.1660158631 - - -
12 Hb_006995_010 0.1673233351 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
13 Hb_007083_050 0.1681356099 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
14 Hb_031866_050 0.1693284642 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
15 Hb_000810_020 0.1708563014 - - -
16 Hb_000181_150 0.173644318 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
17 Hb_003030_040 0.1788701221 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
18 Hb_000084_130 0.1795753602 - - -
19 Hb_116632_010 0.1797949699 - - unnamed protein product [Vitis vinifera]
20 Hb_002783_060 0.1799869249 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_177103_010 Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_007188_030 Hb_007188_030 Hb_177103_010--Hb_007188_030 Hb_006198_090 Hb_006198_090 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_169170_010--Hb_007188_030 Hb_007188_030--Hb_003656_150 Hb_002815_050 Hb_002815_050 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_006198_090 Hb_003030_040 Hb_003030_040 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003656_150--Hb_003030_040 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90639 3.59681 1.05184 28.7463 3.32731 93.5605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8741 8.92272 3.2344 10.8074 6.96831

CAGE analysis