Hb_177152_010

Information

Type -
Description -
Location Contig177152: 5426-5629
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14050g
description POPTRDRAFT_572859; glycosyl hydrolase family 38 family protein
nr
ID XP_002321075.2
description glycosyl hydrolase family 38 family protein [Populus trichocarpa]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID B9IA60
description Alpha-mannosidase OS=Populus trichocarpa GN=POPTR_0014s14050g PE=3 SV=2
Gene Ontology
ID GO:0005774
description glycosyl hydrolase family 38 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177152_010 0.0 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
2 Hb_013358_100 0.1264568874 - - unknown [Medicago truncatula]
3 Hb_145317_010 0.1663011061 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
4 Hb_169329_010 0.1739169479 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
5 Hb_035436_010 0.176103837 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
6 Hb_065841_010 0.1765645154 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
7 Hb_178620_010 0.1859044027 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
8 Hb_040747_010 0.1871935662 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
9 Hb_000258_360 0.1880124854 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
10 Hb_068569_010 0.1885467706 - - -
11 Hb_008054_050 0.1920853716 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
12 Hb_054541_010 0.1951465171 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_004525_080 0.1960650353 - - Sugar transporter ERD6-like 6 [Morus notabilis]
14 Hb_106688_010 0.1963292693 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_161994_040 0.1972130241 - - -
16 Hb_004935_080 0.1992785597 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
17 Hb_018691_010 0.205426816 - - -
18 Hb_025905_020 0.2056459669 - - major allergen Pru ar 1-like [Jatropha curcas]
19 Hb_010964_020 0.2072419076 - - RNA helicase [Arabidopsis thaliana]
20 Hb_007441_090 0.2082345708 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_177152_010 Hb_177152_010 Hb_013358_100 Hb_013358_100 Hb_177152_010--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_169329_010 Hb_169329_010 Hb_177152_010--Hb_169329_010 Hb_035436_010 Hb_035436_010 Hb_177152_010--Hb_035436_010 Hb_065841_010 Hb_065841_010 Hb_177152_010--Hb_065841_010 Hb_178620_010 Hb_178620_010 Hb_177152_010--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_013358_100--Hb_065841_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_169329_010--Hb_004935_080 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_010964_020 Hb_010964_020 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_065841_010--Hb_008054_050 Hb_065841_010--Hb_068569_010 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_178620_010--Hb_010964_020 Hb_178620_010--Hb_068569_010 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_178620_010--Hb_013358_100 Hb_002192_090 Hb_002192_090 Hb_178620_010--Hb_002192_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.785 192.543 210.17 637.503 98.4845 407.906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.436 10.8164 11.8585 53.266 17.1482

CAGE analysis