Hb_177179_010

Information

Type -
Description -
Location Contig177179: 885-2660
Sequence    

Annotation

kegg
ID cic:CICLE_v10012944mg
description hypothetical protein
nr
ID XP_011006971.1
description PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
swissprot
ID Q9FFE0
description Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana GN=At5g16450 PE=1 SV=1
trembl
ID V4SME9
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Citrus clementina GN=CICLE_v10012944mg PE=3 SV=1
Gene Ontology
ID GO:0016740
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17013: 2631-2956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177179_010 0.0 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
2 Hb_001545_210 0.1450289543 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
3 Hb_002513_030 0.2019983264 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
4 Hb_001242_090 0.2357000734 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
5 Hb_003226_290 0.2362193955 - - catalytic, putative [Ricinus communis]
6 Hb_006280_010 0.2567419981 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
7 Hb_004881_100 0.2588662142 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
8 Hb_000276_050 0.2633349213 - - -
9 Hb_054127_050 0.2665252244 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
10 Hb_000296_060 0.2722687214 - - -
11 Hb_005532_010 0.2744268917 - - -
12 Hb_002289_130 0.2748976919 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
13 Hb_130194_010 0.2769540259 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
14 Hb_025311_020 0.2777682349 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
15 Hb_000512_070 0.2779501227 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
16 Hb_005007_040 0.2780341823 - - hypothetical protein VITISV_032357 [Vitis vinifera]
17 Hb_010142_080 0.2837806474 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
18 Hb_187513_010 0.290431852 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
19 Hb_006806_010 0.2953878001 - - -
20 Hb_001523_020 0.2973315874 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]

Gene co-expression network

sample Hb_177179_010 Hb_177179_010 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_002513_030 Hb_002513_030 Hb_177179_010--Hb_002513_030 Hb_001242_090 Hb_001242_090 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_002289_130 Hb_002289_130 Hb_001545_210--Hb_002289_130 Hb_001545_210--Hb_001242_090 Hb_001545_210--Hb_002513_030 Hb_054127_050 Hb_054127_050 Hb_001545_210--Hb_054127_050 Hb_130194_010 Hb_130194_010 Hb_001545_210--Hb_130194_010 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_002513_030--Hb_054127_050 Hb_001523_020 Hb_001523_020 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_001780_120 Hb_001780_120 Hb_002513_030--Hb_001780_120 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_000574_550 Hb_000574_550 Hb_003226_290--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_003226_290--Hb_187513_010 Hb_005285_010 Hb_005285_010 Hb_003226_290--Hb_005285_010 Hb_162126_010 Hb_162126_010 Hb_003226_290--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_003226_290--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_003226_290--Hb_125847_010 Hb_004460_010 Hb_004460_010 Hb_006280_010--Hb_004460_010 Hb_001035_070 Hb_001035_070 Hb_006280_010--Hb_001035_070 Hb_006280_010--Hb_002513_030 Hb_000213_080 Hb_000213_080 Hb_006280_010--Hb_000213_080 Hb_001277_090 Hb_001277_090 Hb_006280_010--Hb_001277_090 Hb_000512_070 Hb_000512_070 Hb_004881_100--Hb_000512_070 Hb_004881_100--Hb_001242_090 Hb_004103_030 Hb_004103_030 Hb_004881_100--Hb_004103_030 Hb_004881_100--Hb_002289_130 Hb_001506_010 Hb_001506_010 Hb_004881_100--Hb_001506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39044 1.1935 1.0331 0.607918 5.16173 3.58099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 59.2851 17.3477 9.47993

CAGE analysis