Hb_177215_030

Information

Type rubber biosynthesis
Description Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location Contig177215: 48117-52503
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09860g
description POPTRDRAFT_180213; hypothetical protein
nr
ID BAF98294.1
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
swissprot
ID Q9M4W3
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1
trembl
ID A9ZN12
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hevea brasiliensis GN=HbMCS PE=2 SV=1
Gene Ontology
ID GO:0008685
description 2-c-methyl-d-erythritol -cyclodiphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17014: 48125-52486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177215_030 0.0 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
2 Hb_000548_070 0.0987356441 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_005016_010 0.0996090999 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_180378_010 0.104934259 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
5 Hb_002615_030 0.1101150417 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
6 Hb_000638_130 0.1116691855 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
7 Hb_000181_460 0.1158151979 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
8 Hb_005686_130 0.1180417293 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
9 Hb_003044_080 0.1181070915 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_000251_030 0.1205938903 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_001728_140 0.1219730559 - - -
12 Hb_000358_020 0.1220007863 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
13 Hb_000465_150 0.1225531338 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
14 Hb_002232_430 0.1229188287 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
15 Hb_000683_050 0.1251663319 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
16 Hb_006059_010 0.125381413 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_009615_060 0.1266130736 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
18 Hb_005015_110 0.1271708191 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
19 Hb_002217_100 0.127365429 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
20 Hb_001510_020 0.1275127938 - - Diaminopimelate epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_177215_030 Hb_177215_030 Hb_000548_070 Hb_000548_070 Hb_177215_030--Hb_000548_070 Hb_005016_010 Hb_005016_010 Hb_177215_030--Hb_005016_010 Hb_180378_010 Hb_180378_010 Hb_177215_030--Hb_180378_010 Hb_002615_030 Hb_002615_030 Hb_177215_030--Hb_002615_030 Hb_000638_130 Hb_000638_130 Hb_177215_030--Hb_000638_130 Hb_000181_460 Hb_000181_460 Hb_177215_030--Hb_000181_460 Hb_001728_140 Hb_001728_140 Hb_000548_070--Hb_001728_140 Hb_009615_060 Hb_009615_060 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_005015_110 Hb_005015_110 Hb_180378_010--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_180378_010--Hb_001571_060 Hb_000139_340 Hb_000139_340 Hb_180378_010--Hb_000139_340 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_180378_010--Hb_005218_080 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_007590_090 Hb_007590_090 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000510_170 Hb_000510_170 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_004326_010 Hb_004326_010 Hb_000181_460--Hb_004326_010 Hb_000181_460--Hb_005016_010 Hb_000181_460--Hb_010390_010 Hb_000181_460--Hb_000110_060 Hb_000181_460--Hb_003044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.072 14.0585 17.6278 29.0876 4.99039 2.3779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.90421 14.367 17.8646 27.4981 25.1834

CAGE analysis