Hb_177281_010

Information

Type -
Description -
Location Contig177281: 5179-6280
Sequence    

Annotation

kegg
ID cit:102619812
description 50S ribosomal protein 5, chloroplastic-like
nr
ID XP_006482011.1
description PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
swissprot
ID P11891
description 50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1
trembl
ID A0A0A0L3F4
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419580 PE=4 SV=1
Gene Ontology
ID GO:0009579
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17019: 5194-6281 , PASA_asmbl_17020: 5208-6286 , PASA_asmbl_17021: 5765-6031
cDNA
(Sanger)
(ID:Location)		 035_E10.ab1: 5208-6286 , 038_C23.ab1: 5228-6281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177281_010 0.0 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
2 Hb_000393_040 0.1020481095 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
3 Hb_001135_070 0.1046392885 - - glutathione-s-transferase omega, putative [Ricinus communis]
4 Hb_000974_040 0.1069072382 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
5 Hb_001623_380 0.1206673605 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
6 Hb_137216_010 0.1252708005 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
7 Hb_002495_090 0.1343918049 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
8 Hb_006198_030 0.139148094 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000302_230 0.1417373614 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000977_100 0.1435983413 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
11 Hb_000009_510 0.1444749596 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
12 Hb_000711_030 0.1446201083 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_058620_080 0.148535899 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
14 Hb_010557_010 0.1491144107 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
15 Hb_005488_160 0.1499718148 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_006681_020 0.1504970695 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
17 Hb_015175_040 0.1509976902 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009393_130 0.1512056985 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
19 Hb_011519_050 0.1520875879 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
20 Hb_004007_170 0.1536721361 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_177281_010 Hb_177281_010 Hb_000393_040 Hb_000393_040 Hb_177281_010--Hb_000393_040 Hb_001135_070 Hb_001135_070 Hb_177281_010--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_177281_010--Hb_000974_040 Hb_001623_380 Hb_001623_380 Hb_177281_010--Hb_001623_380 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_000393_040--Hb_001135_070 Hb_000393_040--Hb_000974_040 Hb_003517_110 Hb_003517_110 Hb_001135_070--Hb_003517_110 Hb_001135_070--Hb_001623_380 Hb_001135_070--Hb_000974_040 Hb_000123_360 Hb_000123_360 Hb_001135_070--Hb_000123_360 Hb_028227_060 Hb_028227_060 Hb_000974_040--Hb_028227_060 Hb_000974_040--Hb_137216_010 Hb_000974_040--Hb_000123_360 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_003680_060 Hb_003680_060 Hb_001623_380--Hb_003680_060 Hb_002272_220 Hb_002272_220 Hb_001623_380--Hb_002272_220 Hb_001623_380--Hb_000393_040 Hb_137216_010--Hb_002495_090 Hb_000174_080 Hb_000174_080 Hb_137216_010--Hb_000174_080 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_137216_010--Hb_000009_510 Hb_137216_010--Hb_000302_230 Hb_002495_090--Hb_000768_120 Hb_000134_040 Hb_000134_040 Hb_002495_090--Hb_000134_040 Hb_007479_010 Hb_007479_010 Hb_002495_090--Hb_007479_010 Hb_006681_020 Hb_006681_020 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37478 0.983795 110.021 29.6134 2.21091 3.90198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74033 8.88089 2.85107 2.98415 99.6565

CAGE analysis