Hb_177343_010

Information

Type -
Description -
Location Contig177343: 8792-25374
Sequence    

Annotation

kegg
ID rcu:RCOM_0985450
description ubiquitin-protein ligase, putative
nr
ID XP_012093325.1
description PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A067LES6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24101 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17024: 8926-14729 , PASA_asmbl_17025: 10426-10781 , PASA_asmbl_17026: 15095-15350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177343_010 0.0 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
2 Hb_000270_660 0.1242792289 - - purine permease, putative [Ricinus communis]
3 Hb_163145_030 0.1251863221 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
4 Hb_059741_010 0.1260496748 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
5 Hb_002164_020 0.1280312761 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011310_050 0.1357572582 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
7 Hb_010175_030 0.1370292424 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_006916_030 0.1386103582 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
9 Hb_035834_010 0.1404386717 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000445_370 0.1431385032 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
11 Hb_001969_140 0.14403465 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
12 Hb_000815_230 0.1451328436 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002320_090 0.1451622898 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
14 Hb_003777_250 0.1454961403 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
15 Hb_000167_040 0.1471945649 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
16 Hb_026549_070 0.1472931641 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
17 Hb_001009_260 0.148444898 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000186_170 0.1484451744 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
19 Hb_009674_050 0.1485481608 - - Endosomal P24A protein precursor, putative [Ricinus communis]
20 Hb_000120_860 0.1487504193 - - nucellin, putative [Ricinus communis]

Gene co-expression network

sample Hb_177343_010 Hb_177343_010 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_163145_030 Hb_163145_030 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_000120_860 Hb_000120_860 Hb_000270_660--Hb_000120_860 Hb_000000_310 Hb_000000_310 Hb_000270_660--Hb_000000_310 Hb_001009_260 Hb_001009_260 Hb_000270_660--Hb_001009_260 Hb_009674_050 Hb_009674_050 Hb_000270_660--Hb_009674_050 Hb_000270_660--Hb_002164_020 Hb_005116_140 Hb_005116_140 Hb_000270_660--Hb_005116_140 Hb_005914_210 Hb_005914_210 Hb_163145_030--Hb_005914_210 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_003025_140 Hb_003025_140 Hb_163145_030--Hb_003025_140 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_059741_010--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_059741_010--Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_059741_010--Hb_001216_110 Hb_000244_260 Hb_000244_260 Hb_059741_010--Hb_000244_260 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_009079_050 Hb_009079_050 Hb_002164_020--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_011310_050--Hb_000679_040 Hb_001969_140 Hb_001969_140 Hb_011310_050--Hb_001969_140 Hb_001195_310 Hb_001195_310 Hb_011310_050--Hb_001195_310 Hb_011310_050--Hb_001216_110 Hb_005348_110 Hb_005348_110 Hb_010175_030--Hb_005348_110 Hb_000390_030 Hb_000390_030 Hb_010175_030--Hb_000390_030 Hb_010175_030--Hb_000011_220 Hb_010175_030--Hb_009674_050 Hb_009252_010 Hb_009252_010 Hb_010175_030--Hb_009252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65699 1.56209 4.51222 7.60245 2.22132 1.89589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.295968 0.465868 2.38881 3.86036 11.451

CAGE analysis