Hb_177343_020

Information

Type -
Description -
Location Contig177343: 19665-20691
Sequence    

Annotation

kegg
ID csv:101208764
description enzymatic polyprotein-like
nr
ID XP_010472228.1
description PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
swissprot
ID -
description -
trembl
ID W5G7L9
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0005634
description ty3 gypsy retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177343_020 0.0 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
2 Hb_004643_030 0.0064255936 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004567_080 0.006488032 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
4 Hb_035265_020 0.015013688 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000648_090 0.0258608304 - - -
6 Hb_007741_060 0.0328268153 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
7 Hb_002421_170 0.0346902433 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
8 Hb_002276_110 0.0382504185 - - protein binding protein, putative [Ricinus communis]
9 Hb_059280_010 0.0411221472 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
10 Hb_000627_060 0.0438539179 - - -
11 Hb_001511_040 0.0478124299 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
12 Hb_007219_010 0.0481866533 - - -
13 Hb_006435_020 0.0514027133 - - sugar transporter, putative [Ricinus communis]
14 Hb_002093_010 0.0567376537 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
15 Hb_002704_090 0.0700070721 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000692_240 0.0747428047 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
17 Hb_020327_010 0.0784862176 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
18 Hb_000574_080 0.079283603 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_004161_040 0.0811240051 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
20 Hb_007933_010 0.0816262237 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_177343_020 Hb_177343_020 Hb_004643_030 Hb_004643_030 Hb_177343_020--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_177343_020--Hb_004567_080 Hb_035265_020 Hb_035265_020 Hb_177343_020--Hb_035265_020 Hb_000648_090 Hb_000648_090 Hb_177343_020--Hb_000648_090 Hb_007741_060 Hb_007741_060 Hb_177343_020--Hb_007741_060 Hb_002421_170 Hb_002421_170 Hb_177343_020--Hb_002421_170 Hb_004643_030--Hb_004567_080 Hb_004643_030--Hb_035265_020 Hb_002276_110 Hb_002276_110 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_000648_090 Hb_004643_030--Hb_007741_060 Hb_004567_080--Hb_035265_020 Hb_004567_080--Hb_002276_110 Hb_004567_080--Hb_000648_090 Hb_004567_080--Hb_007741_060 Hb_035265_020--Hb_000648_090 Hb_035265_020--Hb_002421_170 Hb_001511_040 Hb_001511_040 Hb_035265_020--Hb_001511_040 Hb_000648_090--Hb_002421_170 Hb_000648_090--Hb_001511_040 Hb_000627_060 Hb_000627_060 Hb_007741_060--Hb_000627_060 Hb_002093_010 Hb_002093_010 Hb_007741_060--Hb_002093_010 Hb_006435_020 Hb_006435_020 Hb_007741_060--Hb_006435_020 Hb_002421_170--Hb_001511_040 Hb_000692_240 Hb_000692_240 Hb_002421_170--Hb_000692_240 Hb_002421_170--Hb_004643_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0368968 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.479806

CAGE analysis