Hb_177627_010

Information

Type -
Description -
Location Contig177627: 69-836
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M5XKU8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021588mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177627_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_132629_010 0.0643370179 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_001604_110 0.0742750362 - - -
4 Hb_000007_310 0.0805697867 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
5 Hb_075570_010 0.0862545268 - - -
6 Hb_005539_320 0.0899640241 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
7 Hb_000153_020 0.0933864378 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003494_260 0.1451658991 - - -
9 Hb_001892_160 0.1458624328 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
10 Hb_000153_040 0.1581485459 - - -
11 Hb_001178_120 0.1660390249 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
12 Hb_000094_390 0.1790976619 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
13 Hb_171554_020 0.18126528 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
14 Hb_000345_480 0.1857390774 - - cyclin-dependent protein kinase, putative [Ricinus communis]
15 Hb_182310_010 0.19165745 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_001741_100 0.2155104218 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
17 Hb_156144_020 0.2185476044 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
18 Hb_001241_040 0.2223226593 - - -
19 Hb_002217_130 0.2258841161 - - galactinol synthase-1 [Manihot esculenta]
20 Hb_000563_280 0.2313860449 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_177627_010 Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_177627_010--Hb_132629_010 Hb_001604_110 Hb_001604_110 Hb_177627_010--Hb_001604_110 Hb_000007_310 Hb_000007_310 Hb_177627_010--Hb_000007_310 Hb_075570_010 Hb_075570_010 Hb_177627_010--Hb_075570_010 Hb_005539_320 Hb_005539_320 Hb_177627_010--Hb_005539_320 Hb_000153_020 Hb_000153_020 Hb_177627_010--Hb_000153_020 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_132629_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_132629_010--Hb_000153_040 Hb_001604_110--Hb_005539_320 Hb_001604_110--Hb_000153_020 Hb_001604_110--Hb_132629_010 Hb_001604_110--Hb_000007_310 Hb_001604_110--Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000007_310--Hb_000153_040 Hb_075570_010--Hb_003494_260 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_005539_320--Hb_000153_020 Hb_001178_120 Hb_001178_120 Hb_005539_320--Hb_001178_120 Hb_005539_320--Hb_132629_010 Hb_005539_320--Hb_000007_310 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155693 0 0 0 0.0891394 0.109543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis