Hb_178063_010

Information

Type -
Description -
Location Contig178063: 232-630
Sequence    

Annotation

kegg
ID tcc:TCM_038803
description Gag protease polyprotein
nr
ID KDP24664.1
description hypothetical protein JCGZ_26531 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178063_010 0.0 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
2 Hb_000679_220 0.2559948774 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
3 Hb_001558_050 0.2646853189 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
4 Hb_000837_010 0.2865001767 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
5 Hb_000310_070 0.3017014415 - - BnaA06g08330D [Brassica napus]
6 Hb_002743_040 0.3033967377 - - PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
7 Hb_000389_050 0.3047817783 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
8 Hb_000608_460 0.3056117658 - - -
9 Hb_002936_080 0.305762733 - - Protein bem46, putative [Ricinus communis]
10 Hb_004324_080 0.3068441211 - - -
11 Hb_000429_090 0.308471686 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
12 Hb_007943_190 0.3140692946 - - cytoplasmic dynein light chain, putative [Ricinus communis]
13 Hb_002007_340 0.3148850638 - - cyclin-dependent protein kinase, putative [Ricinus communis]
14 Hb_014568_020 0.3152199529 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
15 Hb_002888_010 0.3172504804 - - -
16 Hb_006938_050 0.320944424 - - PREDICTED: uncharacterized protein LOC105648204 [Jatropha curcas]
17 Hb_002809_150 0.3229478645 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
18 Hb_094900_010 0.3233170595 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000170_120 0.3321787757 - - ATP binding protein, putative [Ricinus communis]
20 Hb_076223_010 0.3398636457 - - -

Gene co-expression network

sample Hb_178063_010 Hb_178063_010 Hb_000679_220 Hb_000679_220 Hb_178063_010--Hb_000679_220 Hb_001558_050 Hb_001558_050 Hb_178063_010--Hb_001558_050 Hb_000837_010 Hb_000837_010 Hb_178063_010--Hb_000837_010 Hb_000310_070 Hb_000310_070 Hb_178063_010--Hb_000310_070 Hb_002743_040 Hb_002743_040 Hb_178063_010--Hb_002743_040 Hb_000389_050 Hb_000389_050 Hb_178063_010--Hb_000389_050 Hb_094900_010 Hb_094900_010 Hb_000679_220--Hb_094900_010 Hb_001059_170 Hb_001059_170 Hb_000679_220--Hb_001059_170 Hb_000679_220--Hb_000389_050 Hb_002936_080 Hb_002936_080 Hb_000679_220--Hb_002936_080 Hb_005344_030 Hb_005344_030 Hb_000679_220--Hb_005344_030 Hb_004672_030 Hb_004672_030 Hb_000679_220--Hb_004672_030 Hb_076223_010 Hb_076223_010 Hb_001558_050--Hb_076223_010 Hb_001558_050--Hb_000837_010 Hb_000116_360 Hb_000116_360 Hb_001558_050--Hb_000116_360 Hb_042202_050 Hb_042202_050 Hb_001558_050--Hb_042202_050 Hb_000077_200 Hb_000077_200 Hb_001558_050--Hb_000077_200 Hb_006938_050 Hb_006938_050 Hb_000837_010--Hb_006938_050 Hb_052764_100 Hb_052764_100 Hb_000837_010--Hb_052764_100 Hb_172665_010 Hb_172665_010 Hb_000837_010--Hb_172665_010 Hb_004218_260 Hb_004218_260 Hb_000837_010--Hb_004218_260 Hb_000460_070 Hb_000460_070 Hb_000837_010--Hb_000460_070 Hb_000429_090 Hb_000429_090 Hb_000310_070--Hb_000429_090 Hb_000310_070--Hb_002936_080 Hb_000530_120 Hb_000530_120 Hb_000310_070--Hb_000530_120 Hb_073490_020 Hb_073490_020 Hb_000310_070--Hb_073490_020 Hb_004162_260 Hb_004162_260 Hb_000310_070--Hb_004162_260 Hb_091194_010 Hb_091194_010 Hb_000310_070--Hb_091194_010 Hb_000192_020 Hb_000192_020 Hb_002743_040--Hb_000192_020 Hb_132840_070 Hb_132840_070 Hb_002743_040--Hb_132840_070 Hb_069696_010 Hb_069696_010 Hb_002743_040--Hb_069696_010 Hb_003304_110 Hb_003304_110 Hb_002743_040--Hb_003304_110 Hb_002320_080 Hb_002320_080 Hb_002743_040--Hb_002320_080 Hb_002743_040--Hb_006938_050 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.157079 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200239 0.157283 0.25153 0 0.276202

CAGE analysis