Hb_178227_010

Information

Type -
Description -
Location Contig178227: 6587-8306
Sequence    

Annotation

kegg
ID rcu:RCOM_1314610
description Mitochondrial import inner membrane translocase subunit Tim13, putative
nr
ID XP_002518947.1
description Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
swissprot
ID Q9XH48
description Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2
trembl
ID B9RYX8
description Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial import inner membrane translocase subunit tim13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17139: 6318-8394 , PASA_asmbl_17140: 6848-7207 , PASA_asmbl_17141: 7612-8120
cDNA
(Sanger)
(ID:Location)		 019_O10.ab1: 6323-6736 , 028_M12.ab1: 6323-6736 , 034_B09.ab1: 6453-8382

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178227_010 0.0 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
2 Hb_000584_020 0.122813309 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
3 Hb_002900_160 0.1387304085 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
4 Hb_014783_010 0.1408608042 - - cold-inducible RNA binding protein, putative [Ricinus communis]
5 Hb_007044_130 0.1420719275 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
6 Hb_002783_270 0.1436322971 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
7 Hb_009476_020 0.1449833591 - - tryptophan biosynthesis protein, putative [Ricinus communis]
8 Hb_001357_100 0.1465756975 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
9 Hb_000096_170 0.1477704573 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
10 Hb_003058_080 0.1489450861 - - Chaperonin 10 isoform 1 [Theobroma cacao]
11 Hb_004223_040 0.1495397728 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
12 Hb_002232_040 0.1511942094 - - -
13 Hb_014720_040 0.1524117528 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
14 Hb_001016_150 0.1535784517 - - Rop1 [Hevea brasiliensis]
15 Hb_000506_070 0.1540360697 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
16 Hb_000352_290 0.1558500902 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
17 Hb_007245_080 0.1580565303 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
18 Hb_000212_210 0.1592915441 - - unnamed protein product [Coffea canephora]
19 Hb_000062_650 0.1593240923 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
20 Hb_007553_020 0.1605885191 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_178227_010 Hb_178227_010 Hb_000584_020 Hb_000584_020 Hb_178227_010--Hb_000584_020 Hb_002900_160 Hb_002900_160 Hb_178227_010--Hb_002900_160 Hb_014783_010 Hb_014783_010 Hb_178227_010--Hb_014783_010 Hb_007044_130 Hb_007044_130 Hb_178227_010--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_178227_010--Hb_002783_270 Hb_009476_020 Hb_009476_020 Hb_178227_010--Hb_009476_020 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_000473_020 Hb_000473_020 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_005667_040 Hb_005667_040 Hb_000584_020--Hb_005667_040 Hb_000352_290 Hb_000352_290 Hb_000584_020--Hb_000352_290 Hb_000000_170 Hb_000000_170 Hb_002900_160--Hb_000000_170 Hb_002900_160--Hb_002783_270 Hb_003018_020 Hb_003018_020 Hb_002900_160--Hb_003018_020 Hb_004052_020 Hb_004052_020 Hb_002900_160--Hb_004052_020 Hb_000699_160 Hb_000699_160 Hb_002900_160--Hb_000699_160 Hb_002900_160--Hb_007044_130 Hb_000268_010 Hb_000268_010 Hb_014783_010--Hb_000268_010 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_003943_130 Hb_003943_130 Hb_014783_010--Hb_003943_130 Hb_002289_120 Hb_002289_120 Hb_014783_010--Hb_002289_120 Hb_014783_010--Hb_001357_100 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_002783_270--Hb_006925_040 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_007245_080 Hb_007245_080 Hb_009476_020--Hb_007245_080 Hb_000506_070 Hb_000506_070 Hb_009476_020--Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_009476_020--Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_009476_020--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_009476_020--Hb_000676_160 Hb_009476_020--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1163 11.7592 38.4452 56.4912 18.8635 25.9942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5017 117.083 14.5959 14.5101 3.45834

CAGE analysis