Hb_178252_010

Information

Type -
Description -
Location Contig178252: 862-1230
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01890g
description POPTRDRAFT_261110; hypothetical protein
nr
ID XP_002324869.2
description hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
swissprot
ID P14009
description 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1
trembl
ID A9PHT6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01890g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17146: 811-1015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178252_010 0.0 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
2 Hb_001102_060 0.0774860068 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
3 Hb_002809_020 0.10206862 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
4 Hb_007017_120 0.1104296869 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
5 Hb_027242_010 0.1112527497 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
6 Hb_055154_010 0.1151120466 - - PREDICTED: laccase-7 [Jatropha curcas]
7 Hb_003480_010 0.1214239018 - - cytochrome P450 family protein [Populus trichocarpa]
8 Hb_003166_020 0.1241027017 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
9 Hb_032621_010 0.1336083836 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
10 Hb_003020_340 0.1375644191 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
11 Hb_069151_010 0.1425629908 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
12 Hb_000364_130 0.143292095 - - unnamed protein product [Vitis vinifera]
13 Hb_003226_050 0.1521475465 - - Pectinesterase-3 precursor, putative [Ricinus communis]
14 Hb_000187_110 0.1523343144 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
15 Hb_000925_120 0.1535571146 - - Spotted leaf protein, putative [Ricinus communis]
16 Hb_000161_230 0.1580417051 - - lactoylglutathione lyase, putative [Ricinus communis]
17 Hb_090510_010 0.1599243271 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
18 Hb_002559_010 0.1617116225 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
19 Hb_028927_010 0.1626118543 - - leucine-rich repeat protein, putative [Ricinus communis]
20 Hb_026650_010 0.1630460482 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_178252_010 Hb_178252_010 Hb_001102_060 Hb_001102_060 Hb_178252_010--Hb_001102_060 Hb_002809_020 Hb_002809_020 Hb_178252_010--Hb_002809_020 Hb_007017_120 Hb_007017_120 Hb_178252_010--Hb_007017_120 Hb_027242_010 Hb_027242_010 Hb_178252_010--Hb_027242_010 Hb_055154_010 Hb_055154_010 Hb_178252_010--Hb_055154_010 Hb_003480_010 Hb_003480_010 Hb_178252_010--Hb_003480_010 Hb_001102_060--Hb_027242_010 Hb_001102_060--Hb_007017_120 Hb_001102_060--Hb_003480_010 Hb_000101_370 Hb_000101_370 Hb_001102_060--Hb_000101_370 Hb_000364_130 Hb_000364_130 Hb_001102_060--Hb_000364_130 Hb_002809_020--Hb_007017_120 Hb_098030_010 Hb_098030_010 Hb_002809_020--Hb_098030_010 Hb_002809_020--Hb_055154_010 Hb_003166_020 Hb_003166_020 Hb_002809_020--Hb_003166_020 Hb_008418_010 Hb_008418_010 Hb_002809_020--Hb_008418_010 Hb_007017_120--Hb_008418_010 Hb_003768_100 Hb_003768_100 Hb_007017_120--Hb_003768_100 Hb_000723_240 Hb_000723_240 Hb_007017_120--Hb_000723_240 Hb_007017_120--Hb_003166_020 Hb_027242_010--Hb_003480_010 Hb_027242_010--Hb_000101_370 Hb_000057_210 Hb_000057_210 Hb_027242_010--Hb_000057_210 Hb_069151_010 Hb_069151_010 Hb_027242_010--Hb_069151_010 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_090510_010 Hb_090510_010 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_055154_010--Hb_069151_010 Hb_003020_340 Hb_003020_340 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_003480_010--Hb_069151_010 Hb_003480_010--Hb_055154_010 Hb_003480_010--Hb_003020_340 Hb_003480_010--Hb_000057_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098284 0.879327 42.4954 33.8489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 102.181 2.82214

CAGE analysis