Hb_178345_010

Information

Type -
Description -
Location Contig178345: 12876-15838
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G084200g
description hypothetical protein
nr
ID XP_007151888.1
description hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7C135
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G084200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178345_010 0.0 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
2 Hb_002851_060 0.1112314985 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
3 Hb_044662_040 0.1172289131 - - -
4 Hb_000977_140 0.1175637755 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
5 Hb_012395_100 0.1268866975 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
6 Hb_000175_520 0.128039068 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_004375_060 0.1288066012 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
8 Hb_013479_020 0.1310162568 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_002863_010 0.1355856 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_004852_020 0.1385326103 - - -
11 Hb_023675_010 0.1431428743 - - -
12 Hb_002078_430 0.1449357594 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
13 Hb_001504_170 0.146762917 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
14 Hb_004449_010 0.1494739123 - - lipase [Ricinus communis]
15 Hb_000352_150 0.1508828052 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
16 Hb_001635_220 0.1533445254 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
17 Hb_002942_030 0.1573607115 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
18 Hb_004607_120 0.1593576847 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
19 Hb_002835_190 0.1608657226 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_005217_020 0.1614844665 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_178345_010 Hb_178345_010 Hb_002851_060 Hb_002851_060 Hb_178345_010--Hb_002851_060 Hb_044662_040 Hb_044662_040 Hb_178345_010--Hb_044662_040 Hb_000977_140 Hb_000977_140 Hb_178345_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060 Hb_002851_060--Hb_044662_040 Hb_011537_040 Hb_011537_040 Hb_002851_060--Hb_011537_040 Hb_004374_010 Hb_004374_010 Hb_002851_060--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_002851_060--Hb_017098_030 Hb_005271_070 Hb_005271_070 Hb_002851_060--Hb_005271_070 Hb_004607_120 Hb_004607_120 Hb_044662_040--Hb_004607_120 Hb_004502_030 Hb_004502_030 Hb_044662_040--Hb_004502_030 Hb_044662_040--Hb_005271_070 Hb_007632_250 Hb_007632_250 Hb_044662_040--Hb_007632_250 Hb_044662_040--Hb_000977_140 Hb_007992_030 Hb_007992_030 Hb_000977_140--Hb_007992_030 Hb_000183_070 Hb_000183_070 Hb_000977_140--Hb_000183_070 Hb_001437_300 Hb_001437_300 Hb_000977_140--Hb_001437_300 Hb_000038_130 Hb_000038_130 Hb_000977_140--Hb_000038_130 Hb_012395_100--Hb_000175_520 Hb_001248_020 Hb_001248_020 Hb_012395_100--Hb_001248_020 Hb_023675_010 Hb_023675_010 Hb_012395_100--Hb_023675_010 Hb_036369_010 Hb_036369_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_004852_020 Hb_004852_020 Hb_012395_100--Hb_004852_020 Hb_000175_520--Hb_004852_020 Hb_002518_250 Hb_002518_250 Hb_000175_520--Hb_002518_250 Hb_002942_030 Hb_002942_030 Hb_000175_520--Hb_002942_030 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_007317_220 Hb_007317_220 Hb_000175_520--Hb_007317_220 Hb_002081_100 Hb_002081_100 Hb_004375_060--Hb_002081_100 Hb_000340_480 Hb_000340_480 Hb_004375_060--Hb_000340_480 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_004025_030 Hb_004025_030 Hb_004375_060--Hb_004025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8288 0.642612 0.797747 0.241268 12.3339 15.5477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4802 8.41895 1.1881 0.882018 0.471235

CAGE analysis