Hb_178620_010

Information

Type -
Description -
Location Contig178620: 1332-1651
Sequence    

Annotation

kegg
ID rcu:RCOM_1324490
description ADP-ribosylation factor, arf, putative
nr
ID XP_002520016.1
description ADP-ribosylation factor, arf, putative [Ricinus communis]
swissprot
ID P91924
description ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3
trembl
ID B9S1Z7
description ADP-ribosylation factor, arf, putative OS=Ricinus communis GN=RCOM_1324490 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor 1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17173: 1016-1513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178620_010 0.0 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
2 Hb_010964_020 0.0891217212 - - RNA helicase [Arabidopsis thaliana]
3 Hb_068569_010 0.1508004616 - - -
4 Hb_025905_020 0.1509081678 - - major allergen Pru ar 1-like [Jatropha curcas]
5 Hb_002388_010 0.1628794505 - - -
6 Hb_013358_100 0.1680541152 - - unknown [Medicago truncatula]
7 Hb_002192_090 0.1702390235 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
8 Hb_001623_300 0.1707403783 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
9 Hb_001623_290 0.1712508705 - - unknown [Populus trichocarpa]
10 Hb_070469_010 0.1726459275 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
11 Hb_001518_070 0.1751546019 - - conserved hypothetical protein [Ricinus communis]
12 Hb_035436_010 0.1762986355 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
13 Hb_011287_040 0.1780621756 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
14 Hb_142751_010 0.1794832226 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000053_030 0.1797914181 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
16 Hb_000429_250 0.181551342 - - hypothetical protein L484_000744 [Morus notabilis]
17 Hb_004935_080 0.1821414156 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
18 Hb_003925_070 0.1832840166 - - ATOZI1, putative [Ricinus communis]
19 Hb_106415_010 0.1833944697 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
20 Hb_179812_010 0.1849469348 - - TdcA1-ORF1-ORF2 [Daucus carota]

Gene co-expression network

sample Hb_178620_010 Hb_178620_010 Hb_010964_020 Hb_010964_020 Hb_178620_010--Hb_010964_020 Hb_068569_010 Hb_068569_010 Hb_178620_010--Hb_068569_010 Hb_025905_020 Hb_025905_020 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_013358_100 Hb_013358_100 Hb_178620_010--Hb_013358_100 Hb_002192_090 Hb_002192_090 Hb_178620_010--Hb_002192_090 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_010964_020--Hb_068569_010 Hb_010964_020--Hb_002192_090 Hb_010964_020--Hb_025905_020 Hb_068569_010--Hb_013358_100 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_065841_010 Hb_065841_010 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_035436_010 Hb_035436_010 Hb_025905_020--Hb_035436_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_013358_100--Hb_065841_010 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5302 27.4476 40.4821 168.328 41.6029 140.347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7602 28.7825 3.53262 12.1039 3.72067

CAGE analysis