Hb_178793_010

Information

Type -
Description -
Location Contig178793: 740-2246
Sequence    

Annotation

kegg
ID rcu:RCOM_0191600
description Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative (EC:3.4.19.12)
nr
ID XP_010275439.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A067KY60
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03454 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin carboxyl-terminal hydrolase isozyme l3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178793_010 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
2 Hb_018691_020 0.1433309727 - - -
3 Hb_028487_130 0.1496457259 - - kinase family protein [Populus trichocarpa]
4 Hb_002849_070 0.1572003177 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
5 Hb_000200_170 0.1603112754 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
6 Hb_005000_050 0.1608631121 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
7 Hb_000920_220 0.1615404678 - - PREDICTED: uncharacterized protein LOC105631216 [Jatropha curcas]
8 Hb_001255_010 0.1642313578 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
9 Hb_001818_060 0.1654522403 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
10 Hb_053519_010 0.1662736082 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
11 Hb_001518_060 0.1709737521 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
12 Hb_000997_340 0.1713834172 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_001951_240 0.171976942 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
14 Hb_004712_160 0.1726083586 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
15 Hb_000056_080 0.1743652042 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
16 Hb_017159_010 0.1751959873 - - -
17 Hb_010315_100 0.1757450506 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
18 Hb_178658_010 0.1759197843 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
19 Hb_164926_050 0.1787638467 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
20 Hb_004631_110 0.1798289323 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_178793_010 Hb_178793_010 Hb_018691_020 Hb_018691_020 Hb_178793_010--Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_018691_020--Hb_028487_130 Hb_001255_010 Hb_001255_010 Hb_018691_020--Hb_001255_010 Hb_007136_010 Hb_007136_010 Hb_018691_020--Hb_007136_010 Hb_053519_010 Hb_053519_010 Hb_018691_020--Hb_053519_010 Hb_001518_060 Hb_001518_060 Hb_018691_020--Hb_001518_060 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_000203_270 Hb_000203_270 Hb_028487_130--Hb_000203_270 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_010315_100 Hb_010315_100 Hb_028487_130--Hb_010315_100 Hb_002849_070--Hb_000200_170 Hb_000056_080 Hb_000056_080 Hb_002849_070--Hb_000056_080 Hb_002849_070--Hb_000203_270 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000200_170--Hb_000203_270 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_000200_170--Hb_001818_060 Hb_005375_070 Hb_005375_070 Hb_005000_050--Hb_005375_070 Hb_149484_010 Hb_149484_010 Hb_005000_050--Hb_149484_010 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_023386_050 Hb_023386_050 Hb_005000_050--Hb_023386_050 Hb_007574_050 Hb_007574_050 Hb_005000_050--Hb_007574_050 Hb_004712_160 Hb_004712_160 Hb_005000_050--Hb_004712_160 Hb_000920_220--Hb_005000_050 Hb_164926_050 Hb_164926_050 Hb_000920_220--Hb_164926_050 Hb_004032_090 Hb_004032_090 Hb_000920_220--Hb_004032_090 Hb_000920_220--Hb_023386_050 Hb_001898_010 Hb_001898_010 Hb_000920_220--Hb_001898_010 Hb_002375_060 Hb_002375_060 Hb_000920_220--Hb_002375_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120059 2.52575 1.25898 1.74884 0.345827 0.37945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207272 0.380272 0 0.858083 0.435419

CAGE analysis