Hb_178818_010

Information

Type -
Description -
Location Contig178818: 1-501
Sequence    

Annotation

kegg
ID tcc:TCM_042495
description CRINKLY4 related 3, putative
nr
ID XP_007008964.1
description CRINKLY4 related 3, putative [Theobroma cacao]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID A0A061FT55
description CRINKLY4 related 3, putative OS=Theobroma cacao GN=TCM_042495 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178818_010 0.0 - - CRINKLY4 related 3, putative [Theobroma cacao]
2 Hb_000009_150 0.1232841334 - - carbohydrate transporter, putative [Ricinus communis]
3 Hb_009449_100 0.1284729079 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
4 Hb_003430_070 0.1290062076 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
5 Hb_132840_020 0.1305473739 - - PREDICTED: protein LHY [Jatropha curcas]
6 Hb_005080_020 0.130947669 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_054865_050 0.1359686955 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_012366_050 0.141178497 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
9 Hb_048476_040 0.1416464147 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
10 Hb_110558_010 0.144948212 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
11 Hb_000329_790 0.1465283511 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
12 Hb_001514_240 0.1553249646 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
13 Hb_026698_020 0.1584967621 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_005064_070 0.1598497452 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
15 Hb_001195_230 0.162242831 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
16 Hb_001357_060 0.163144397 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
17 Hb_014361_170 0.1662598808 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
18 Hb_001722_070 0.1664832816 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
19 Hb_004032_090 0.1665795045 - - PREDICTED: protein AIG1 [Jatropha curcas]
20 Hb_000086_640 0.1685428969 - - Phytosulfokine receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_178818_010 Hb_178818_010 Hb_000009_150 Hb_000009_150 Hb_178818_010--Hb_000009_150 Hb_009449_100 Hb_009449_100 Hb_178818_010--Hb_009449_100 Hb_003430_070 Hb_003430_070 Hb_178818_010--Hb_003430_070 Hb_132840_020 Hb_132840_020 Hb_178818_010--Hb_132840_020 Hb_005080_020 Hb_005080_020 Hb_178818_010--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_178818_010--Hb_054865_050 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_009449_100--Hb_054865_050 Hb_001514_240 Hb_001514_240 Hb_009449_100--Hb_001514_240 Hb_005064_070 Hb_005064_070 Hb_009449_100--Hb_005064_070 Hb_002259_220 Hb_002259_220 Hb_009449_100--Hb_002259_220 Hb_026698_020 Hb_026698_020 Hb_009449_100--Hb_026698_020 Hb_009449_100--Hb_000329_790 Hb_006052_060 Hb_006052_060 Hb_003430_070--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_003430_070--Hb_132840_020 Hb_003430_070--Hb_000329_790 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_132840_020--Hb_000329_790 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_005080_020--Hb_000329_790 Hb_054865_050--Hb_005064_070 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_000375_060 Hb_000375_060 Hb_054865_050--Hb_000375_060 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244616 2.27929 2.16428 1.27872 0 0.0512998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.401321 0.105095 0.178115 0.873625 1.17935

CAGE analysis