Hb_178968_110

Information

Type -
Description -
Location Contig178968: 105950-107038
Sequence    

Annotation

kegg
ID rcu:RCOM_1443220
description hypothetical protein
nr
ID XP_012067439.1
description PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26936 PE=4 SV=1
Gene Ontology
ID GO:0070461
description PREDICTED: uncharacterized protein LOC105630268

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_110 0.0 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
2 Hb_003266_130 0.0626960923 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_005532_060 0.0681462836 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
4 Hb_000457_150 0.0696357449 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
5 Hb_000179_210 0.0749611302 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
6 Hb_000614_230 0.0753665727 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
7 Hb_010172_050 0.078790253 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
8 Hb_007951_050 0.0793055497 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_008453_090 0.0797758723 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
10 Hb_055062_030 0.0798966781 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
11 Hb_000110_160 0.0807090621 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000567_260 0.0822205488 - - BnaA09g41440D [Brassica napus]
13 Hb_005062_070 0.084213117 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_006501_040 0.0842143507 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
15 Hb_000059_220 0.0843083244 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
16 Hb_000754_060 0.0847243857 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
17 Hb_001329_300 0.0852428931 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
18 Hb_008695_210 0.0853866979 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
19 Hb_002518_140 0.0864577404 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
20 Hb_001671_020 0.0871399106 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]

Gene co-expression network

sample Hb_178968_110 Hb_178968_110 Hb_003266_130 Hb_003266_130 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_003266_130--Hb_010172_050 Hb_005532_060--Hb_000457_150 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005532_060--Hb_005488_010 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_000614_230--Hb_001085_170 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.502 6.25097 3.86117 3.09285 11.6078 14.2816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.549 17.1876 24.9652 5.64555 5.38967

CAGE analysis