Hb_178968_130

Information

Type -
Description -
Location Contig178968: 113205-115278
Sequence    

Annotation

kegg
ID rcu:RCOM_1443230
description hypothetical protein
nr
ID ABK96444.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID -
description -
trembl
ID A9PJ91
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17264: 113254-115285
cDNA
(Sanger)
(ID:Location)		 023_C10.ab1: 113556-115285

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_130 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_027625_010 0.1007528699 - - PREDICTED: protein sym-1-like [Jatropha curcas]
3 Hb_000230_510 0.1031094454 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
4 Hb_000817_030 0.1065112728 - - mak, putative [Ricinus communis]
5 Hb_002235_280 0.107225623 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
6 Hb_000120_020 0.1086882876 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
7 Hb_003207_170 0.1107064236 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
8 Hb_002742_090 0.1115872543 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_002256_020 0.1132956072 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005568_120 0.1133811373 - - Prephenate dehydratase [Hevea brasiliensis]
11 Hb_003994_040 0.1139012751 - - -
12 Hb_012490_050 0.116552348 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
13 Hb_000072_080 0.1168926149 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
14 Hb_028515_010 0.1180723233 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
15 Hb_011381_080 0.1192678377 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
16 Hb_001083_020 0.1197029725 - - -
17 Hb_001633_030 0.1211188827 - - -
18 Hb_000373_130 0.1215789079 - - PREDICTED: protein FAM188A [Jatropha curcas]
19 Hb_000072_180 0.1222052875 - - PREDICTED: EVI5-like protein [Jatropha curcas]
20 Hb_009393_210 0.1222558163 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]

Gene co-expression network

sample Hb_178968_130 Hb_178968_130 Hb_027625_010 Hb_027625_010 Hb_178968_130--Hb_027625_010 Hb_000230_510 Hb_000230_510 Hb_178968_130--Hb_000230_510 Hb_000817_030 Hb_000817_030 Hb_178968_130--Hb_000817_030 Hb_002235_280 Hb_002235_280 Hb_178968_130--Hb_002235_280 Hb_000120_020 Hb_000120_020 Hb_178968_130--Hb_000120_020 Hb_003207_170 Hb_003207_170 Hb_178968_130--Hb_003207_170 Hb_027625_010--Hb_000817_030 Hb_000046_290 Hb_000046_290 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180 Hb_005289_030 Hb_005289_030 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_005463_140 Hb_005463_140 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040 Hb_011381_080 Hb_011381_080 Hb_000120_020--Hb_011381_080 Hb_000120_020--Hb_002742_090 Hb_000016_160 Hb_000016_160 Hb_000120_020--Hb_000016_160 Hb_028515_010 Hb_028515_010 Hb_000120_020--Hb_028515_010 Hb_000108_190 Hb_000108_190 Hb_000120_020--Hb_000108_190 Hb_000254_050 Hb_000254_050 Hb_000120_020--Hb_000254_050 Hb_001153_060 Hb_001153_060 Hb_003207_170--Hb_001153_060 Hb_000019_070 Hb_000019_070 Hb_003207_170--Hb_000019_070 Hb_000373_130 Hb_000373_130 Hb_003207_170--Hb_000373_130 Hb_000567_120 Hb_000567_120 Hb_003207_170--Hb_000567_120 Hb_000985_060 Hb_000985_060 Hb_003207_170--Hb_000985_060 Hb_003207_170--Hb_027625_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.5283 57.3902 17.2698 92.4546 51.3105 92.0773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.563 287.641 203.162 59.0921 118.536

CAGE analysis