Hb_178968_150

Information

Type -
Description -
Location Contig178968: 133859-135501
Sequence    

Annotation

kegg
ID rcu:RCOM_1443450
description zinc finger protein, putative
nr
ID XP_002512779.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q4KLT0
description Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1
trembl
ID B9RGS0
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1443450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17269: 133919-135562 , PASA_asmbl_17270: 133919-134761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_150 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000028_470 0.0667261216 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
3 Hb_001493_100 0.070332316 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
4 Hb_004813_010 0.0913805541 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_005754_020 0.0932109044 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
6 Hb_004738_090 0.0937237392 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000784_090 0.0990233987 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_000714_020 0.0998340661 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
9 Hb_000258_430 0.1018999577 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_000590_090 0.1048391213 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_000771_110 0.1086059729 - - protein phosphatase 2C [Hevea brasiliensis]
12 Hb_000085_340 0.1093781986 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
13 Hb_000676_220 0.1103635377 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_000418_180 0.1104192607 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000062_230 0.1113327776 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
16 Hb_000282_060 0.1122040638 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
17 Hb_002377_040 0.1123344889 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_001673_120 0.1124407298 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
19 Hb_000107_390 0.112802778 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
20 Hb_002067_160 0.1137338801 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_178968_150 Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_178968_150--Hb_000028_470 Hb_001493_100 Hb_001493_100 Hb_178968_150--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_178968_150--Hb_004813_010 Hb_005754_020 Hb_005754_020 Hb_178968_150--Hb_005754_020 Hb_004738_090 Hb_004738_090 Hb_178968_150--Hb_004738_090 Hb_000784_090 Hb_000784_090 Hb_178968_150--Hb_000784_090 Hb_000028_470--Hb_005754_020 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000028_470--Hb_000784_090 Hb_001493_100--Hb_004813_010 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_001493_100--Hb_000784_090 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_005754_020--Hb_002044_090 Hb_005754_020--Hb_000062_230 Hb_005754_020--Hb_002377_040 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.497 15.7618 12.0654 18.0752 88.703 88.4218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.9469 75.1624 71.0634 12.6738 7.84275

CAGE analysis