Hb_179129_010

Information

Type -
Description -
Location Contig179129: 1173-3672
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10470g
description POPTRDRAFT_1106845; hypothetical protein
nr
ID XP_002324489.1
description hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
swissprot
ID Q67YC9
description Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1
trembl
ID B9IM31
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10470g PE=4 SV=1
Gene Ontology
ID GO:0016740
description transferring glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17323: 1111-2501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179129_010 0.0 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
2 Hb_004346_050 0.0343374994 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
3 Hb_016371_010 0.0399532575 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_078954_030 0.0402706338 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001424_010 0.0416519094 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_000025_700 0.0556480219 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
7 Hb_000530_040 0.0626423678 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
8 Hb_022167_010 0.0661884237 - - Kinase, putative isoform 2 [Theobroma cacao]
9 Hb_048141_050 0.0701094508 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
10 Hb_000697_030 0.0706881005 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
11 Hb_004411_010 0.0711532476 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
12 Hb_002805_200 0.0739855401 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
13 Hb_000236_130 0.0752038499 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
14 Hb_000282_020 0.0760677943 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
15 Hb_003651_030 0.0791682073 - - lyase, putative [Ricinus communis]
16 Hb_000928_100 0.0806279246 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_000281_120 0.0810040816 - - protein binding protein, putative [Ricinus communis]
18 Hb_000359_050 0.0813078198 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
19 Hb_003573_030 0.0821758935 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
20 Hb_000087_040 0.0840208548 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_179129_010 Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_179129_010--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_179129_010--Hb_016371_010 Hb_078954_030 Hb_078954_030 Hb_179129_010--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_179129_010--Hb_001424_010 Hb_000025_700 Hb_000025_700 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_078954_030 Hb_004346_050--Hb_000025_700 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_016371_010--Hb_078954_030 Hb_004411_010 Hb_004411_010 Hb_016371_010--Hb_004411_010 Hb_078954_030--Hb_001424_010 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_001424_010--Hb_000697_030 Hb_001424_010--Hb_000025_700 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_000025_700--Hb_016371_010 Hb_000530_040--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000530_040--Hb_003573_030 Hb_001975_120 Hb_001975_120 Hb_000530_040--Hb_001975_120 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.8254 76.9128 19.9905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0937075 0 0.397042 54.467

CAGE analysis