Hb_179138_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig179138: 18-926
Sequence    

Annotation

kegg
ID mtr:MTR_4g022960
description NBS-containing resistance-like protein
nr
ID XP_012065700.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067L8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179138_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_003983_010 0.0815408725 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_159809_080 0.0842539782 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_001174_020 0.1286601108 - - -
5 Hb_000011_320 0.1333837578 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
6 Hb_011849_020 0.1505603015 - - dioxygenase family protein [Populus trichocarpa]
7 Hb_008304_050 0.1545746005 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
8 Hb_004893_010 0.1565747397 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
9 Hb_116194_010 0.1595787456 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_003304_090 0.1708953174 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
11 Hb_004785_090 0.1729061271 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
12 Hb_002808_010 0.1735282595 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
13 Hb_090390_010 0.1792355363 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
14 Hb_000254_060 0.179400889 - - conserved hypothetical protein [Ricinus communis]
15 Hb_164117_010 0.1811722298 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
16 Hb_000934_180 0.1817160738 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
17 Hb_000705_050 0.1819038184 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
18 Hb_085315_010 0.1829943073 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
19 Hb_003212_020 0.1832473921 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
20 Hb_009122_010 0.1846495129 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_179138_010 Hb_179138_010 Hb_003983_010 Hb_003983_010 Hb_179138_010--Hb_003983_010 Hb_159809_080 Hb_159809_080 Hb_179138_010--Hb_159809_080 Hb_001174_020 Hb_001174_020 Hb_179138_010--Hb_001174_020 Hb_000011_320 Hb_000011_320 Hb_179138_010--Hb_000011_320 Hb_011849_020 Hb_011849_020 Hb_179138_010--Hb_011849_020 Hb_008304_050 Hb_008304_050 Hb_179138_010--Hb_008304_050 Hb_003983_010--Hb_159809_080 Hb_090390_010 Hb_090390_010 Hb_003983_010--Hb_090390_010 Hb_000254_060 Hb_000254_060 Hb_003983_010--Hb_000254_060 Hb_094437_030 Hb_094437_030 Hb_003983_010--Hb_094437_030 Hb_003983_010--Hb_008304_050 Hb_159809_080--Hb_000011_320 Hb_159809_080--Hb_008304_050 Hb_159809_080--Hb_001174_020 Hb_159809_080--Hb_011849_020 Hb_002808_010 Hb_002808_010 Hb_001174_020--Hb_002808_010 Hb_003212_020 Hb_003212_020 Hb_001174_020--Hb_003212_020 Hb_000705_050 Hb_000705_050 Hb_001174_020--Hb_000705_050 Hb_001174_020--Hb_000011_320 Hb_003304_090 Hb_003304_090 Hb_001174_020--Hb_003304_090 Hb_000011_320--Hb_003304_090 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_000011_320--Hb_008304_050 Hb_000011_320--Hb_000705_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_000011_320--Hb_004893_010 Hb_000163_010 Hb_000163_010 Hb_011849_020--Hb_000163_010 Hb_003913_060 Hb_003913_060 Hb_011849_020--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_011849_020--Hb_015978_010 Hb_011849_020--Hb_000254_060 Hb_000009_430 Hb_000009_430 Hb_011849_020--Hb_000009_430 Hb_008304_050--Hb_000389_100 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.890269 0.169287 8.61535 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0656897 0 5.16374 4.27487

CAGE analysis