Hb_179154_020

Information

Type -
Description -
Location Contig179154: 32463-38454
Sequence    

Annotation

kegg
ID rcu:RCOM_1094170
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002526624.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID B9SKV5
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1094170 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cinnamoyl- reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17328: 32473-36707 , PASA_asmbl_17329: 33129-36707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179154_020 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_001959_270 0.0590709484 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_007818_040 0.0729637524 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
4 Hb_000377_050 0.0774453981 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_007305_020 0.0840688107 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
6 Hb_007576_230 0.084762413 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
7 Hb_002571_030 0.0851917715 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
8 Hb_000029_350 0.0895961327 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
9 Hb_009476_090 0.0905088695 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
10 Hb_013358_070 0.0907925678 - - protein with unknown function [Ricinus communis]
11 Hb_007283_030 0.0911915705 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
12 Hb_003943_020 0.0913879001 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
13 Hb_007044_110 0.0974138778 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_001723_140 0.0979108469 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
15 Hb_000318_120 0.0986549245 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
16 Hb_000086_150 0.0987728771 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
17 Hb_006573_170 0.0993270363 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005214_150 0.0993355789 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
19 Hb_000205_260 0.0999383547 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
20 Hb_013405_160 0.1004063998 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_179154_020 Hb_179154_020 Hb_001959_270 Hb_001959_270 Hb_179154_020--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_179154_020--Hb_007818_040 Hb_000377_050 Hb_000377_050 Hb_179154_020--Hb_000377_050 Hb_007305_020 Hb_007305_020 Hb_179154_020--Hb_007305_020 Hb_007576_230 Hb_007576_230 Hb_179154_020--Hb_007576_230 Hb_002571_030 Hb_002571_030 Hb_179154_020--Hb_002571_030 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_001959_270--Hb_007818_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150 Hb_001959_270--Hb_000377_050 Hb_007818_040--Hb_002571_030 Hb_007283_030 Hb_007283_030 Hb_007818_040--Hb_007283_030 Hb_007818_040--Hb_007576_230 Hb_007818_040--Hb_000377_050 Hb_009476_090 Hb_009476_090 Hb_000377_050--Hb_009476_090 Hb_000377_050--Hb_007283_030 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_000703_130 Hb_000703_130 Hb_000377_050--Hb_000703_130 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_007576_230--Hb_007283_030 Hb_007576_220 Hb_007576_220 Hb_007576_230--Hb_007576_220 Hb_000086_050 Hb_000086_050 Hb_007576_230--Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8838 52.635 37.0042 16.6006 37.1396 32.8728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5567 8.8549 8.24257 35.0518 43.3602

CAGE analysis