Hb_179286_010

Information

Type -
Description -
Location Contig179286: 3-170
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05520g
description STRUWWELPETER family protein
nr
ID XP_006382795.1
description STRUWWELPETER family protein [Populus trichocarpa]
swissprot
ID Q9SR02
description Mediator of RNA polymerase II transcription subunit 14 OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
trembl
ID B9MZD3
description STRUWWELPETER family protein OS=Populus trichocarpa GN=POPTR_0005s05520g PE=4 SV=1
Gene Ontology
ID GO:0009506
description mediator of rna polymerase ii transcription subunit 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179286_010 0.0 - - STRUWWELPETER family protein [Populus trichocarpa]
2 Hb_009803_010 0.2160107083 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
3 Hb_010367_020 0.2352356347 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
4 Hb_000025_220 0.2386030829 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
5 Hb_122741_010 0.2495896927 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
6 Hb_000162_270 0.2533162788 - - PREDICTED: uncharacterized protein LOC104442671 [Eucalyptus grandis]
7 Hb_002016_030 0.2642395755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005263_010 0.27147989 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
9 Hb_001916_010 0.2789489539 - - hypothetical protein VITISV_021527 [Vitis vinifera]
10 Hb_000025_080 0.2791947927 - - -
11 Hb_009119_010 0.2795778162 - - -
12 Hb_000244_140 0.2800331748 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
13 Hb_158296_010 0.2811814351 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
14 Hb_005368_030 0.2835493997 - - -
15 Hb_000172_470 0.2879804451 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
16 Hb_041601_010 0.2970960036 - - -
17 Hb_000085_130 0.2974863305 - - -
18 Hb_004218_100 0.2985114385 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
19 Hb_000577_070 0.3012796156 - - -
20 Hb_000092_050 0.302698517 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]

Gene co-expression network

sample Hb_179286_010 Hb_179286_010 Hb_009803_010 Hb_009803_010 Hb_179286_010--Hb_009803_010 Hb_010367_020 Hb_010367_020 Hb_179286_010--Hb_010367_020 Hb_000025_220 Hb_000025_220 Hb_179286_010--Hb_000025_220 Hb_122741_010 Hb_122741_010 Hb_179286_010--Hb_122741_010 Hb_000162_270 Hb_000162_270 Hb_179286_010--Hb_000162_270 Hb_002016_030 Hb_002016_030 Hb_179286_010--Hb_002016_030 Hb_009803_010--Hb_000025_220 Hb_009803_010--Hb_122741_010 Hb_005263_010 Hb_005263_010 Hb_009803_010--Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_009803_010--Hb_005368_030 Hb_009803_010--Hb_010367_020 Hb_182507_010 Hb_182507_010 Hb_009803_010--Hb_182507_010 Hb_010367_020--Hb_002016_030 Hb_010367_020--Hb_122741_010 Hb_009119_010 Hb_009119_010 Hb_010367_020--Hb_009119_010 Hb_000025_080 Hb_000025_080 Hb_010367_020--Hb_000025_080 Hb_158296_010 Hb_158296_010 Hb_010367_020--Hb_158296_010 Hb_000025_220--Hb_005263_010 Hb_000733_260 Hb_000733_260 Hb_000025_220--Hb_000733_260 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000574_310 Hb_000574_310 Hb_000025_220--Hb_000574_310 Hb_001916_010 Hb_001916_010 Hb_122741_010--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_122741_010--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_122741_010--Hb_000134_100 Hb_122741_010--Hb_158296_010 Hb_007403_070 Hb_007403_070 Hb_000162_270--Hb_007403_070 Hb_004218_100 Hb_004218_100 Hb_000162_270--Hb_004218_100 Hb_001621_120 Hb_001621_120 Hb_000162_270--Hb_001621_120 Hb_005843_020 Hb_005843_020 Hb_000162_270--Hb_005843_020 Hb_000359_300 Hb_000359_300 Hb_000162_270--Hb_000359_300 Hb_000953_120 Hb_000953_120 Hb_002016_030--Hb_000953_120 Hb_002016_030--Hb_009119_010 Hb_041601_010 Hb_041601_010 Hb_002016_030--Hb_041601_010 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.20928 118.036 0 34.3602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4279 0 0 0 0

CAGE analysis