Hb_179296_010

Information

Type -
Description -
Location Contig179296: 1870-2639
Sequence    

Annotation

kegg
ID olu:OSTLU_86947
description hypothetical protein
nr
ID KJB34983.1
description hypothetical protein B456_006G094200 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2Q6G0
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G094200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179296_010 0.0 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
2 Hb_174865_010 0.0603428993 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
3 Hb_000735_040 0.0773705822 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_006915_040 0.0800776434 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
5 Hb_000134_070 0.0821196728 - - 60S ribosomal protein L6, putative [Ricinus communis]
6 Hb_000676_160 0.083139122 - - folate carrier protein, putative [Ricinus communis]
7 Hb_001512_080 0.0831569446 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
8 Hb_004459_040 0.0864750265 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
9 Hb_003633_060 0.0868551712 - - translationally controlled tumor protein [Hevea brasiliensis]
10 Hb_005235_030 0.0868624593 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
11 Hb_005181_030 0.087418339 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
12 Hb_086639_090 0.0885668274 - - 60S ribosomal protein L7a, putative [Ricinus communis]
13 Hb_002000_140 0.088864093 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
14 Hb_004157_030 0.0923636462 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_006541_010 0.0923674309 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
16 Hb_003018_020 0.0931726329 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
17 Hb_006925_040 0.0936416515 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
18 Hb_005063_050 0.0941970622 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
19 Hb_000087_130 0.0949908467 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
20 Hb_007441_300 0.095114656 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_179296_010 Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_179296_010--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_179296_010--Hb_000735_040 Hb_006915_040 Hb_006915_040 Hb_179296_010--Hb_006915_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_179296_010--Hb_000676_160 Hb_001512_080 Hb_001512_080 Hb_179296_010--Hb_001512_080 Hb_174865_010--Hb_000735_040 Hb_174865_010--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_000087_130 Hb_000087_130 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_000134_070--Hb_002660_030 Hb_003226_210 Hb_003226_210 Hb_000134_070--Hb_003226_210 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_001505_020 Hb_001505_020 Hb_000134_070--Hb_001505_020 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.3512 27.9829 128.936 141.412 64.236 140.284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
247.811 501.262 187.036 101.001 81.628

CAGE analysis