Hb_179367_010

Information

Type -
Description -
Location Contig179367: 268-1491
Sequence    

Annotation

kegg
ID mtr:MTR_3g079390
description hypothetical protein
nr
ID XP_012083833.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14352 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17342: 515-671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179367_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_104362_020 0.0208921557 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_002014_120 0.0239698481 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
4 Hb_004652_040 0.0243702207 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_103000_010 0.0320292968 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
6 Hb_000174_130 0.0353750594 - - flowering locus T-like protein [Fagus crenata]
7 Hb_151027_010 0.0421757431 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
8 Hb_009838_030 0.0449652844 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
9 Hb_003337_010 0.0461848361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_166700_010 0.0518311144 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_000352_020 0.0535993466 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
12 Hb_001948_100 0.0649303204 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010261_050 0.0847432402 - - DNA binding protein, putative [Ricinus communis]
14 Hb_174829_030 0.085181236 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001006_130 0.0891384395 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
16 Hb_001006_080 0.0920547401 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
17 Hb_003073_060 0.1002444723 - - -
18 Hb_005428_010 0.1017567594 - - cytochrome P450, putative [Ricinus communis]
19 Hb_007125_020 0.1018499926 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
20 Hb_000152_090 0.1020618459 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_179367_010 Hb_179367_010 Hb_104362_020 Hb_104362_020 Hb_179367_010--Hb_104362_020 Hb_002014_120 Hb_002014_120 Hb_179367_010--Hb_002014_120 Hb_004652_040 Hb_004652_040 Hb_179367_010--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_179367_010--Hb_103000_010 Hb_000174_130 Hb_000174_130 Hb_179367_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_179367_010--Hb_151027_010 Hb_104362_020--Hb_151027_010 Hb_104362_020--Hb_000174_130 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_104362_020--Hb_103000_010 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_002014_120--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_002014_120--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_002014_120--Hb_001948_100 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_009838_030 Hb_004652_040--Hb_000174_130 Hb_103000_010--Hb_003337_010 Hb_103000_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_103000_010--Hb_166700_010 Hb_000174_130--Hb_166700_010 Hb_000174_130--Hb_151027_010 Hb_151027_010--Hb_166700_010 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.510924 0.424522 2.34607 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis