Hb_179520_010

Information

Type -
Description -
Location Contig179520: 743-1177
Sequence    

Annotation

kegg
ID sot:102584707
description uncharacterized LOC102584707
nr
ID XP_012437464.1
description PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179520_010 0.0 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
2 Hb_108528_010 0.0228842723 - - unnamed protein product [Coffea canephora]
3 Hb_010174_070 0.1099460758 - - -
4 Hb_000720_190 0.1473156978 - - unknown [Populus trichocarpa x Populus deltoides]
5 Hb_001902_120 0.1514884733 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
6 Hb_004064_020 0.1547449462 - - hypothetical protein M569_06853, partial [Genlisea aurea]
7 Hb_001842_130 0.1935143952 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017134_010 0.1935666084 - - HEV1.2 [Hevea brasiliensis]
9 Hb_003052_210 0.1969776059 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008516_040 0.1973877884 - - conserved hypothetical protein [Ricinus communis]
11 Hb_064885_080 0.203797973 - - -
12 Hb_002045_200 0.2058850398 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
13 Hb_001425_050 0.2081726412 - - -
14 Hb_003913_140 0.2103542933 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
15 Hb_000749_240 0.2192693428 - - conserved hypothetical protein [Ricinus communis]
16 Hb_105602_020 0.2217724324 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
17 Hb_000115_050 0.2240080331 - - -
18 Hb_052941_010 0.2248034966 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
19 Hb_005568_010 0.2248522392 - - -
20 Hb_027346_020 0.239713321 - - -

Gene co-expression network

sample Hb_179520_010 Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_179520_010--Hb_108528_010 Hb_010174_070 Hb_010174_070 Hb_179520_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_179520_010--Hb_000720_190 Hb_001902_120 Hb_001902_120 Hb_179520_010--Hb_001902_120 Hb_004064_020 Hb_004064_020 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_108528_010--Hb_010174_070 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_010174_070--Hb_001902_120 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_010174_070--Hb_004064_020 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_000720_190--Hb_003052_210 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_002045_200 Hb_002045_200 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_001842_130--Hb_108528_010 Hb_001842_130--Hb_064885_080 Hb_001842_130--Hb_010174_070 Hb_009644_040 Hb_009644_040 Hb_001842_130--Hb_009644_040 Hb_001842_130--Hb_004064_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0.13392 0.219586 0.056581 0

CAGE analysis