Hb_179763_020

Information

Type -
Description -
Location Contig179763: 3998-4736
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179763_020 0.0 - - -
2 Hb_123915_050 0.107296001 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
3 Hb_000227_030 0.2607153974 - - -
4 Hb_002188_100 0.2666855688 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000563_220 0.2895045857 - - hypothetical protein VITISV_004111 [Vitis vinifera]
6 Hb_039635_010 0.2943125207 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_000463_050 0.2950333794 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
8 Hb_024828_040 0.300818781 - - -
9 Hb_002153_010 0.3046590811 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_174107_010 0.3221278719 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
11 Hb_024505_030 0.3305826132 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
12 Hb_155932_010 0.3306782315 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
13 Hb_083569_010 0.333531867 - - -
14 Hb_003666_010 0.3336103206 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
15 Hb_001662_160 0.3346273367 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
16 Hb_165078_010 0.3362830696 - - -
17 Hb_163413_010 0.3367695253 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
18 Hb_004968_060 0.3479003366 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000184_120 0.3496143386 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
20 Hb_077562_040 0.3510782965 - - hypothetical protein JCGZ_24573 [Jatropha curcas]

Gene co-expression network

sample Hb_179763_020 Hb_179763_020 Hb_123915_050 Hb_123915_050 Hb_179763_020--Hb_123915_050 Hb_000227_030 Hb_000227_030 Hb_179763_020--Hb_000227_030 Hb_002188_100 Hb_002188_100 Hb_179763_020--Hb_002188_100 Hb_000563_220 Hb_000563_220 Hb_179763_020--Hb_000563_220 Hb_039635_010 Hb_039635_010 Hb_179763_020--Hb_039635_010 Hb_000463_050 Hb_000463_050 Hb_179763_020--Hb_000463_050 Hb_123915_050--Hb_000463_050 Hb_123915_050--Hb_002188_100 Hb_024828_040 Hb_024828_040 Hb_123915_050--Hb_024828_040 Hb_000454_030 Hb_000454_030 Hb_123915_050--Hb_000454_030 Hb_165078_010 Hb_165078_010 Hb_123915_050--Hb_165078_010 Hb_000227_030--Hb_039635_010 Hb_151978_010 Hb_151978_010 Hb_000227_030--Hb_151978_010 Hb_079993_010 Hb_079993_010 Hb_000227_030--Hb_079993_010 Hb_163413_010 Hb_163413_010 Hb_000227_030--Hb_163413_010 Hb_002641_110 Hb_002641_110 Hb_000227_030--Hb_002641_110 Hb_002188_100--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_002188_100--Hb_024505_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_001922_040 Hb_001922_040 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_003609_010 Hb_003609_010 Hb_000563_220--Hb_003609_010 Hb_083569_010 Hb_083569_010 Hb_000563_220--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_000563_220--Hb_094101_010 Hb_000563_220--Hb_024828_040 Hb_002904_090 Hb_002904_090 Hb_000563_220--Hb_002904_090 Hb_039635_010--Hb_151978_010 Hb_036285_010 Hb_036285_010 Hb_039635_010--Hb_036285_010 Hb_002750_020 Hb_002750_020 Hb_039635_010--Hb_002750_020 Hb_039635_010--Hb_002641_110 Hb_000463_050--Hb_024505_030 Hb_000463_050--Hb_001922_040 Hb_002081_100 Hb_002081_100 Hb_000463_050--Hb_002081_100 Hb_000612_070 Hb_000612_070 Hb_000463_050--Hb_000612_070 Hb_004375_060 Hb_004375_060 Hb_000463_050--Hb_004375_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0507124 0 0 0 0.05109 0.136096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.092928 0 0 0

CAGE analysis