Hb_179812_010

Information

Type -
Description -
Location Contig179812: 66-365
Sequence    

Annotation

kegg
ID -
description -
nr
ID BAB64937.1
description TdcA1-ORF1-ORF2 [Daucus carota]
swissprot
ID -
description -
trembl
ID Q948N8
description TdcA1-ORF1-ORF2 protein (Fragment) OS=Daucus carota GN=TdcA1-ORF1-ORF2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179812_010 0.0 - - TdcA1-ORF1-ORF2 [Daucus carota]
2 Hb_005542_090 0.1511953624 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
3 Hb_004195_230 0.1794977871 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002388_010 0.179939128 - - -
5 Hb_002687_080 0.1801935122 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
6 Hb_178620_010 0.1849469348 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
7 Hb_150766_020 0.1855783751 - - hypothetical protein VITISV_030841 [Vitis vinifera]
8 Hb_010504_030 0.1903208449 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
9 Hb_066913_010 0.1920482338 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
10 Hb_003266_040 0.1993037001 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
11 Hb_000157_080 0.2008513275 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
12 Hb_007083_020 0.2052416065 - - hypothetical protein F775_15403 [Aegilops tauschii]
13 Hb_183522_010 0.2072917331 - - Far upstream element-binding protein, putative [Ricinus communis]
14 Hb_000327_290 0.2074780842 - - Histone H4 [Triticum urartu]
15 Hb_000136_180 0.2088983313 - - ribosomal protein S28, putative [Ricinus communis]
16 Hb_146675_010 0.2099176896 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
17 Hb_099878_050 0.2104907614 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
18 Hb_095192_010 0.2133072731 - - hypothetical protein VITISV_043980 [Vitis vinifera]
19 Hb_106415_010 0.2142020863 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
20 Hb_000994_110 0.2205962195 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_179812_010 Hb_179812_010 Hb_005542_090 Hb_005542_090 Hb_179812_010--Hb_005542_090 Hb_004195_230 Hb_004195_230 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_150766_020 Hb_150766_020 Hb_179812_010--Hb_150766_020 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_000868_050 Hb_000868_050 Hb_004195_230--Hb_000868_050 Hb_066913_010 Hb_066913_010 Hb_004195_230--Hb_066913_010 Hb_004669_030 Hb_004669_030 Hb_004195_230--Hb_004669_030 Hb_000789_150 Hb_000789_150 Hb_004195_230--Hb_000789_150 Hb_004195_230--Hb_002388_010 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002192_090 Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180 Hb_010964_020 Hb_010964_020 Hb_178620_010--Hb_010964_020 Hb_068569_010 Hb_068569_010 Hb_178620_010--Hb_068569_010 Hb_025905_020 Hb_025905_020 Hb_178620_010--Hb_025905_020 Hb_178620_010--Hb_002388_010 Hb_013358_100 Hb_013358_100 Hb_178620_010--Hb_013358_100 Hb_178620_010--Hb_002192_090 Hb_000157_080 Hb_000157_080 Hb_150766_020--Hb_000157_080 Hb_150766_020--Hb_004195_230 Hb_002025_210 Hb_002025_210 Hb_150766_020--Hb_002025_210 Hb_000994_110 Hb_000994_110 Hb_150766_020--Hb_000994_110 Hb_009393_190 Hb_009393_190 Hb_150766_020--Hb_009393_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.846793 0.77016 1.38307 5.37493 1.55479 5.84921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24576 1.76898 0 1.09475 0

CAGE analysis