Hb_179960_010

Information

Type -
Description -
Location Contig179960: 913-1431
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23360g
description POPTRDRAFT_717610; zinc finger family protein
nr
ID XP_012077150.1
description PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
swissprot
ID Q8H7N9
description E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica GN=Os03g0188200 PE=2 SV=1
trembl
ID A0A067KG51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07564 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179960_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
2 Hb_012395_050 0.1015222887 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
3 Hb_001178_090 0.109084412 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
4 Hb_005784_060 0.1262336248 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
5 Hb_002203_020 0.129045124 - - conserved hypothetical protein [Ricinus communis]
6 Hb_158092_040 0.1304216627 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_155444_010 0.1401019292 - - -
8 Hb_002592_050 0.1425118938 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
9 Hb_001119_070 0.1474902622 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
10 Hb_002749_040 0.1482503188 - - Ribosomal protein L6 family protein [Theobroma cacao]
11 Hb_134014_010 0.1494735482 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_007138_030 0.1497322012 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
13 Hb_000997_240 0.1506402465 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
14 Hb_002774_120 0.1526660622 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
15 Hb_005000_280 0.1562845856 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
16 Hb_000320_030 0.159280755 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
17 Hb_080477_080 0.1614375408 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
18 Hb_006615_230 0.1619473526 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_001769_070 0.162287831 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
20 Hb_002999_080 0.162355692 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]

Gene co-expression network

sample Hb_179960_010 Hb_179960_010 Hb_012395_050 Hb_012395_050 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010 Hb_012395_050--Hb_155444_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_000032_430 Hb_000032_430 Hb_001178_090--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_001178_090--Hb_000203_070 Hb_001178_090--Hb_012395_050 Hb_003050_100 Hb_003050_100 Hb_001178_090--Hb_003050_100 Hb_002592_050 Hb_002592_050 Hb_001178_090--Hb_002592_050 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_000003_110 Hb_000003_110 Hb_005784_060--Hb_000003_110 Hb_000975_200 Hb_000975_200 Hb_005784_060--Hb_000975_200 Hb_005784_060--Hb_000997_240 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_004117_020 Hb_004117_020 Hb_002203_020--Hb_004117_020 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_158092_040--Hb_134014_010 Hb_155444_010--Hb_029142_040 Hb_002518_020 Hb_002518_020 Hb_155444_010--Hb_002518_020 Hb_000645_160 Hb_000645_160 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_155444_010--Hb_000997_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88033 8.6863 20.1224 74.6132 0.675477 2.1544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64222 1.191 2.87963 23.8925 12.9058

CAGE analysis