Hb_180003_010

Information

Type -
Description -
Location Contig180003: 28-528
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID XP_012088539.1
description PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9SDR5
description Retrovirus-related Pol polyprotein from transposon 297 OS=Morus notabilis GN=L484_022002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180003_010 0.0 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
2 Hb_030449_010 0.0010766053 - - -
3 Hb_021470_010 0.0074050209 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_096257_010 0.009194068 - - -
5 Hb_000894_050 0.0099391121 - - -
6 Hb_004409_010 0.0114643402 - - -
7 Hb_141990_060 0.0138271508 - - -
8 Hb_003206_040 0.0147197201 - - Auxin efflux carrier component, putative [Ricinus communis]
9 Hb_007586_010 0.0630461482 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
10 Hb_123056_010 0.1068512066 - - -
11 Hb_001703_100 0.1403776851 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
12 Hb_002269_010 0.1470231533 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
13 Hb_005269_010 0.1779342643 - - -
14 Hb_011113_020 0.1833887391 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
15 Hb_085922_010 0.1889374645 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_010531_060 0.2311788168 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
17 Hb_000504_250 0.2508673447 - - -
18 Hb_155880_010 0.2557831191 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_178817_010 0.2731825546 - - protease [Gossypium hirsutum]
20 Hb_023024_010 0.2756642095 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]

Gene co-expression network

sample Hb_180003_010 Hb_180003_010 Hb_030449_010 Hb_030449_010 Hb_180003_010--Hb_030449_010 Hb_021470_010 Hb_021470_010 Hb_180003_010--Hb_021470_010 Hb_096257_010 Hb_096257_010 Hb_180003_010--Hb_096257_010 Hb_000894_050 Hb_000894_050 Hb_180003_010--Hb_000894_050 Hb_004409_010 Hb_004409_010 Hb_180003_010--Hb_004409_010 Hb_141990_060 Hb_141990_060 Hb_180003_010--Hb_141990_060 Hb_030449_010--Hb_021470_010 Hb_030449_010--Hb_096257_010 Hb_030449_010--Hb_004409_010 Hb_030449_010--Hb_000894_050 Hb_030449_010--Hb_141990_060 Hb_021470_010--Hb_004409_010 Hb_021470_010--Hb_141990_060 Hb_003206_040 Hb_003206_040 Hb_021470_010--Hb_003206_040 Hb_021470_010--Hb_096257_010 Hb_096257_010--Hb_000894_050 Hb_096257_010--Hb_004409_010 Hb_096257_010--Hb_141990_060 Hb_000894_050--Hb_021470_010 Hb_000894_050--Hb_004409_010 Hb_000894_050--Hb_141990_060 Hb_004409_010--Hb_141990_060 Hb_004409_010--Hb_003206_040 Hb_141990_060--Hb_003206_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0571456 0.0490138 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis